{"id":"W2800524745","doi":"10.3201/eid2406.171648","title":"Genomic Epidemiology of Global Carbapenemase-Producing<i>Enterobacter</i>spp., 2008–2014","year":2018,"lang":"en","type":"article","venue":"Emerging infectious diseases","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":155,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Klebsiella pneumoniae; Enterobacter; Biology; Whole genome sequencing; Molecular epidemiology; Clade; Multilocus sequence typing; DNA sequencing; Microbiology; Genome; Genetics; Genotype; Gene; Phylogenetics; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002203211,0.0002471045,0.0003601365,0.00003761574,0.0001265282,0.000009163028,0.0002555054,0.0001291477,0.0002014745],"category_scores_gemma":[0.0005489265,0.0002452433,0.000197342,0.0001210215,0.0004154291,0.000007396703,0.0001750015,0.00005765532,0.00009680213],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005787637,"about_ca_system_score_gemma":0.0001168558,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002106422,"about_ca_topic_score_gemma":0.0002218384,"domain_scores_codex":[0.9982185,0.0001962938,0.000460068,0.0006012208,0.00009358386,0.0004302849],"domain_scores_gemma":[0.9986618,0.00003331115,0.0002914828,0.000706016,0.0001647264,0.0001426855],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001059507,0.0001057618,0.9494669,0.00004858768,0.0001252439,0.000002228729,0.00001383939,0.00004447686,0.03722134,0.0001117554,0.01240178,0.0003521418],"study_design_scores_gemma":[0.0004829582,0.0004304306,0.9846593,0.00004300504,0.00008643504,0.0000290542,0.00001821945,0.00002237671,0.005213985,0.000354049,0.008375799,0.0002844197],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9940574,0.002006595,0.001278881,0.00008243306,0.001004467,0.0001749051,0.0001124534,0.00005552999,0.001227311],"genre_scores_gemma":[0.9977755,0.000221885,0.0003064544,0.0003561553,0.0010155,0.000008497357,0.0001129846,0.00003098036,0.000172057],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03519238,"threshold_uncertainty_score":1,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009233062139192219,"score_gpt":0.2739776685888421,"score_spread":0.2647446064496499,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}