{"id":"W2800631077","doi":"10.3168/jds.2018-14388","title":"Short communication: Uncovering quantitative trait loci associated with resistance to Mycobacterium avium ssp. paratuberculosis infection in Holstein cattle using a high-density single nucleotide polymorphism panel","year":2018,"lang":"en","type":"article","venue":"Journal of Dairy Science","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"","keywords":"Paratuberculosis; Biology; Single-nucleotide polymorphism; Genetics; Quantitative trait locus; Autosome; Genetic architecture; Candidate gene; Genotype; Genome-wide association study; Mycobacterium avium subspecies paratuberculosis; Mycobacterium; Gene; X chromosome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001686911,0.0001668649,0.0004117552,0.0004986899,0.0003010466,0.0001509483,0.0003042388,0.00006895542,0.00003512612],"category_scores_gemma":[0.001356654,0.0001389295,0.00006997626,0.001923631,0.0005974635,0.001032875,0.0001127737,0.0003849853,0.000009439041],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009254398,"about_ca_system_score_gemma":0.0005711818,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008478995,"about_ca_topic_score_gemma":0.002213949,"domain_scores_codex":[0.9976608,0.0001714696,0.0005057692,0.00028233,0.000919564,0.0004601026],"domain_scores_gemma":[0.997625,0.0002179488,0.0003035683,0.0003745715,0.001091256,0.0003876544],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00159049,0.0006281533,0.4842643,0.00004770427,0.00007827563,0.0001317263,0.002195974,0.0001756999,0.5096818,0.00005406776,0.0006883695,0.000463466],"study_design_scores_gemma":[0.0007846647,0.00135625,0.9494123,0.0009979201,0.0000597146,0.00009174291,0.0002255581,0.00009746998,0.04663921,0.00006378083,0.0001112332,0.0001600894],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975383,0.00007663444,0.0004252394,0.0011607,0.0001828121,0.0002341572,0.00001461892,0.00001661101,0.0003509488],"genre_scores_gemma":[0.9948294,0.00003827304,0.004680546,0.0002461915,0.0001272534,0.000003880441,0.000004372492,0.00001606065,0.00005401144],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4651481,"threshold_uncertainty_score":0.5665379,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05615879617987959,"score_gpt":0.3161463219757121,"score_spread":0.2599875257958325,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}