{"id":"W2800631077","doi":"10.3168/jds.2018-14388","title":"Short communication: Uncovering quantitative trait loci associated with resistance to Mycobacterium avium ssp. paratuberculosis infection in Holstein cattle using a high-density single nucleotide polymorphism panel","year":2018,"lang":"en","type":"article","venue":"Journal of Dairy Science","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"","keywords":"Paratuberculosis; Biology; Single-nucleotide polymorphism; Genetics; Quantitative trait locus; Autosome; Genetic architecture; Candidate gene; Genotype; Genome-wide association study; Mycobacterium avium subspecies paratuberculosis; Mycobacterium; Gene; X chromosome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003750313,0.0002577917,0.0001774161,0.0003322645,0.0001922422,0.0003248974,0.0002330434,0.0003375109,0.003025757],"category_scores_gemma":[0.0005834703,0.00007166489,0.0001283193,0.000358226,0.0001702182,0.000096458,0.0001628929,0.0002648263,0.0007106595],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001584918,"about_ca_system_score_gemma":0.00009718182,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006920587,"about_ca_topic_score_gemma":0.001027919,"domain_scores_codex":[0.9997799,0.00003397261,0.000009237438,0.0001014608,0.00004962596,0.00002577367],"domain_scores_gemma":[0.9994924,0.0001696397,0.0001512792,0.00002302907,0.00004991514,0.0001136869],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002931392,0.000327917,0.1431128,0.0003317381,0.0002072415,0.001064877,0.0003642763,0.0004047145,0.8042454,0.0001443932,0.002726492,0.04413869],"study_design_scores_gemma":[0.00009289962,0.0008344047,0.9590381,0.00001478683,0.0001138256,0.001431463,0.0001634919,0.0008943843,0.03360916,0.0001095731,0.0036819,0.00001604337],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9943447,0.0005664724,0.002278858,0.0002060878,0.00008311609,0.00001176011,0.001913983,0.00004323998,0.0005517665],"genre_scores_gemma":[0.9889138,0.0003386869,0.003081239,0.0001819675,0.000207109,0.00002510831,0.003844207,0.00002495191,0.003382933],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003025757,"threshold_uncertainty_score":0.01012218,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05615879617987959,"score_gpt":0.3161463219757121,"score_spread":0.2599875257958325,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}