{"id":"W2800972175","doi":"10.1093/ofid/ofy085","title":"Canada-Wide Epidemic of emm74 Group A Streptococcus Invasive Disease","year":2018,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; Toronto Public Health; University of Alberta; Saskatchewan Disease Control Laboratory; Institut National de Santé Publique du Québec; McGill University and Génome Québec Innovation Centre; Provincial Laboratory of Public Health; Sinai Health System; University of Toronto; Government of New Brunswick; BC Centre for Disease Control; Public Health Ontario","funders":"Public Health Agency of Canada","keywords":"Multilocus sequence typing; clone (Java method); Disease; Whole genome sequencing; Medicine; Phylogenetic tree; Biology; Genome; Genotype; Genetics; Gene; Internal medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003114138,0.0003058605,0.000243145,0.001228096,0.001708939,0.0007276637,0.000555342,0.0002612899,0.002412533],"category_scores_gemma":[0.0008894739,0.0001512818,0.0002949509,0.002121967,0.0004621747,0.0001876134,0.0006488282,0.0005861117,0.0001100604],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01603089,"about_ca_system_score_gemma":0.03176529,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9818891,"about_ca_topic_score_gemma":0.9886271,"domain_scores_codex":[0.9995387,0.00002489396,0.00001348902,0.00005888774,0.0001977722,0.0001663168],"domain_scores_gemma":[0.9992415,0.00003286148,0.0001317945,0.00002046492,0.0003622235,0.0002112227],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002240114,0.00005230868,0.9449171,0.0001890008,0.0001296533,0.0009586085,0.000819171,0.0007488622,0.005020843,0.0009289481,0.0092312,0.03678036],"study_design_scores_gemma":[0.00000876459,0.00003528655,0.9895436,0.00005849547,0.00004126289,0.0004646159,0.001173544,0.0008764382,0.0005584869,0.00009918315,0.007123394,0.0000169617],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9810197,0.001954999,0.0006834641,0.001427892,0.00003839889,0.00005879612,0.005670303,0.00009951027,0.009047148],"genre_scores_gemma":[0.9951166,0.00120683,0.0006939305,0.0002852837,0.00001631348,0.000008317747,0.001418526,0.000007438935,0.001246679],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01811093,"threshold_uncertainty_score":0.1163128,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01529491491793297,"score_gpt":0.291879074804091,"score_spread":0.276584159886158,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}