{"id":"W2800972175","doi":"10.1093/ofid/ofy085","title":"Canada-Wide Epidemic of emm74 Group A Streptococcus Invasive Disease","year":2018,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; Toronto Public Health; University of Alberta; Saskatchewan Disease Control Laboratory; Institut National de Santé Publique du Québec; McGill University and Génome Québec Innovation Centre; Provincial Laboratory of Public Health; Sinai Health System; University of Toronto; Government of New Brunswick; BC Centre for Disease Control; Public Health Ontario","funders":"Public Health Agency of Canada","keywords":"Multilocus sequence typing; clone (Java method); Disease; Whole genome sequencing; Medicine; Phylogenetic tree; Biology; Genome; Genotype; Genetics; Gene; Internal medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0000628022,0.0002885095,0.0005173333,0.0001296969,0.0003016335,0.0000553656,0.0002068216,0.00005972661,0.001290765],"category_scores_gemma":[0.0008323824,0.0002436107,0.0002083347,0.0003942529,0.0002447962,0.0002495621,0.0002694943,0.0001072237,0.00009682866],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003720195,"about_ca_system_score_gemma":0.001937652,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.3321069,"about_ca_topic_score_gemma":0.4385629,"domain_scores_codex":[0.9982949,0.00007158894,0.0004443196,0.0004702208,0.0002709105,0.0004480943],"domain_scores_gemma":[0.9978205,0.0002802805,0.0002303112,0.0006613775,0.0002854669,0.0007220737],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002594343,0.0009346944,0.9561818,0.00007067587,0.0003520211,0.00008760405,0.00001193669,0.000005774384,0.00006643785,0.00110736,0.03873996,0.002182317],"study_design_scores_gemma":[0.00314719,0.001125352,0.9787831,0.0003040347,0.0006215162,0.00002006786,0.00009573863,0.00003306776,0.0006881858,0.002395662,0.01250724,0.0002788319],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.971212,0.0003318218,0.0000674614,0.0009251109,0.0004332428,0.002890976,0.000668331,0.0001075524,0.02336356],"genre_scores_gemma":[0.9963121,0.00004156878,0.00003134452,0.001969855,0.0001137908,0.0005489602,0.0002494443,0.00004075576,0.0006921195],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.106456,"threshold_uncertainty_score":0.9996222,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01529491491793297,"score_gpt":0.291879074804091,"score_spread":0.276584159886158,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}