{"id":"W2801215907","doi":"10.22215/etd/2017-12013","title":"A Taxonomic and Phylogenetic Investigation of Conifer Endophytes of Eastern Canada","year":2017,"lang":"en","type":"dissertation","venue":"","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Carleton University","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada","keywords":"Endophyte; Biology; Herbarium; Taxonomy (biology); Phylogenetic tree; Biological dispersal; Moss; Plant use of endophytic fungi in defense; Taxon; Host (biology); Taxonomic rank; GenBank; Ecology; Habitat; Botany; Evolutionary biology; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003273005,0.0002775135,0.0002772913,0.002938825,0.005405285,0.001476403,0.0005271728,0.00026379,0.001146704],"category_scores_gemma":[0.0005490975,0.0001760681,0.0001463182,0.00410415,0.0009255899,0.0002903775,0.0007556432,0.000396244,0.0002761497],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01319371,"about_ca_system_score_gemma":0.01818592,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9751387,"about_ca_topic_score_gemma":0.9925385,"domain_scores_codex":[0.9994829,0.00001658658,0.00001236484,0.00008727958,0.0001334418,0.0002673897],"domain_scores_gemma":[0.9989778,0.00004268825,0.00009541478,0.00002054089,0.000665619,0.0001980242],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003653087,0.0001060167,0.8542871,0.0001076775,0.00003932777,0.0007286408,0.01652532,0.0003235732,0.04636507,0.001311627,0.000884664,0.07895568],"study_design_scores_gemma":[0.000002433765,0.00003246465,0.98472,0.00002567086,0.00001176034,0.0002123762,0.007195431,0.0001796452,0.0007042631,0.00005436184,0.006852803,0.000008914915],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9924017,0.0008025633,0.0002101423,0.00008684522,0.000004461165,0.00003862571,0.0005637591,0.000005456511,0.005886361],"genre_scores_gemma":[0.9912041,0.001397448,0.001174844,0.00008373793,0.000004254222,0.00001442278,0.0008347081,0.000006621491,0.005279949],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02486134,"threshold_uncertainty_score":0.0957275,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00934357996717018,"score_gpt":0.2089093356417972,"score_spread":0.1995657556746271,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}