{"id":"W2801261270","doi":"10.1128/genomea.00276-18","title":"Complete Genome Sequence of Methylomonas denitrificans Strain FJG1, an Obligate Aerobic Methanotroph That Can Couple Methane Oxidation with Denitrification","year":2018,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Microbial metabolism and enzyme function","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; University of Alberta; Alberta Innovates; Alberta Innovates - Technology Futures; Government of Canada; National Aeronautics and Space Administration","keywords":"Methanotroph; Denitrification; Biology; Anaerobic oxidation of methane; Formate; Strain (injury); Methane; Gene; Whole genome sequencing; Genome; Obligate; Nitrate; Microbiology; Genetics; Biochemistry; Chemistry; Botany; Nitrogen; Ecology; Organic chemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003546675,0.001618324,0.00133369,0.002495004,0.001106298,0.0006979995,0.0007119746,0.001051722,0.005465544],"category_scores_gemma":[0.0008904304,0.0005290394,0.0008511624,0.004350643,0.0003121128,0.0005485451,0.0004963464,0.00146284,0.004389481],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008114506,"about_ca_system_score_gemma":0.002708348,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01806937,"about_ca_topic_score_gemma":0.01558232,"domain_scores_codex":[0.9997416,0.00002400917,0.00002508454,0.00007434323,0.00009203657,0.00004298842],"domain_scores_gemma":[0.9994666,0.00008831454,0.0001279064,0.00003624321,0.0001575047,0.0001233501],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003684117,0.0003761436,0.008283823,0.005275309,0.0002271442,0.001518149,0.0008460319,0.001591084,0.8914681,0.001040183,0.03228293,0.05340701],"study_design_scores_gemma":[0.0007457244,0.001319304,0.4285924,0.00103894,0.001504371,0.002955347,0.001023367,0.003516054,0.1222126,0.001705987,0.4350538,0.000332005],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.2088265,0.01077091,0.007599656,0.001493007,0.0005379128,0.000369295,0.7606865,0.001269907,0.00844631],"genre_scores_gemma":[0.05866547,0.002804929,0.0115733,0.0002158126,0.00007384241,0.0001808276,0.9216414,0.0002176476,0.004626739],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.01806937,"threshold_uncertainty_score":0.03592837,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04612468554920985,"score_gpt":0.2677883935666482,"score_spread":0.2216637080174384,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}