{"id":"W2801261270","doi":"10.1128/genomea.00276-18","title":"Complete Genome Sequence of Methylomonas denitrificans Strain FJG1, an Obligate Aerobic Methanotroph That Can Couple Methane Oxidation with Denitrification","year":2018,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Microbial metabolism and enzyme function","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; University of Alberta; Alberta Innovates; Alberta Innovates - Technology Futures; Government of Canada; National Aeronautics and Space Administration","keywords":"Methanotroph; Denitrification; Biology; Anaerobic oxidation of methane; Formate; Strain (injury); Methane; Gene; Whole genome sequencing; Genome; Obligate; Nitrate; Microbiology; Genetics; Biochemistry; Chemistry; Botany; Nitrogen; Ecology; Organic chemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005209259,0.0002909714,0.0003070297,0.0001512378,0.0001616584,0.00003461364,0.0003828236,0.0001533918,0.00009775638],"category_scores_gemma":[0.00002520332,0.0002720247,0.00006852159,0.0003881753,0.0002577067,0.00003502878,0.00006072047,0.0001017986,0.0000274168],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005470309,"about_ca_system_score_gemma":0.0001808272,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003861793,"about_ca_topic_score_gemma":0.0003505698,"domain_scores_codex":[0.9980143,0.0001905604,0.0003921071,0.0006365011,0.0003432865,0.0004232464],"domain_scores_gemma":[0.9983189,0.000008314492,0.0003599703,0.0006677412,0.0004928471,0.0001522858],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003270751,0.00008739111,0.0002220704,0.00002518408,0.000134923,0.000001606262,0.0002909321,0.00007617314,0.9980383,0.00004946463,0.00005742433,0.0006894587],"study_design_scores_gemma":[0.00130533,0.001486999,0.006000924,0.00001510642,0.0001645255,0.00002274448,0.0003508362,0.0000391916,0.9006881,0.00007018587,0.08937749,0.0004786324],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9774764,0.0003788131,0.01896076,0.00006248695,0.0002112363,0.0005343439,0.00221804,0.00002421058,0.0001337315],"genre_scores_gemma":[0.9830601,0.0002268373,0.005400576,0.0002133821,0.0003358169,0.00005090818,0.0101305,0.00004290168,0.0005389396],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09735026,"threshold_uncertainty_score":0.9999732,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04612468554920985,"score_gpt":0.2677883935666482,"score_spread":0.2216637080174384,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}