{"id":"W2801392460","doi":"10.1186/s12711-018-0371-4","title":"Genomic prediction of piglet response to infection with one of two porcine reproductive and respiratory syndrome virus isolates","year":2018,"lang":"en","type":"article","venue":"Genetics Selection Evolution","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"National Institute of Food and Agriculture; Genome Canada; National Pork Board; U.S. Department of Agriculture","keywords":"Porcine reproductive and respiratory syndrome virus; Biology; Virology; Genomic selection; Virus; Selection (genetic algorithm); Respiratory system; Computational biology; Genetics; Gene; Genotype; Single-nucleotide polymorphism; Machine learning","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007717027,0.0004429935,0.0003017816,0.0003022899,0.0001161731,0.0004253198,0.0002236796,0.0003630935,0.0008148242],"category_scores_gemma":[0.001210823,0.0001066197,0.0004408968,0.000243315,0.0001626714,0.0001349874,0.0002367531,0.0004320421,0.0002762738],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002390816,"about_ca_system_score_gemma":0.0001734287,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001692235,"about_ca_topic_score_gemma":0.002163004,"domain_scores_codex":[0.9997202,0.00006862874,0.00001518363,0.0001231862,0.00004157552,0.00003129376],"domain_scores_gemma":[0.9990068,0.0006832976,0.0001292601,0.00006271801,0.00007411678,0.00004394022],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001499102,0.0002495176,0.6741862,0.0001218604,0.0005861624,0.0001476788,0.0001233624,0.02643029,0.2672343,0.00008732307,0.000475252,0.02885897],"study_design_scores_gemma":[0.0000331706,0.000648639,0.8997465,0.00001325477,0.0002002992,0.0001817836,0.0000579231,0.06554926,0.03284551,0.0001943261,0.000507598,0.0000217727],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9920328,0.00006546058,0.005989116,0.00003616942,0.000006133734,0.000008929461,0.001569616,0.00006950356,0.0002222225],"genre_scores_gemma":[0.98953,0.00002966159,0.005205646,0.00003962309,0.000004504615,0.00001490773,0.004923975,0.0000118284,0.0002398128],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001692235,"threshold_uncertainty_score":0.00408119,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02317301011196822,"score_gpt":0.2327330547553796,"score_spread":0.2095600446434114,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}