{"id":"W2801467281","doi":"10.1128/msphere.00090-18","title":"Beaver Fever: Whole-Genome Characterization of Waterborne Outbreak and Sporadic Isolates To Study the Zoonotic Transmission of Giardiasis","year":2018,"lang":"en","type":"article","venue":"mSphere","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":66,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University; Provincial Health Services Authority; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Giardia; Outbreak; Biology; Transmission (telecommunications); Waterborne diseases; Zoonosis; Genetic diversity; Beaver; Wildlife; Feces; Giardia lamblia; Genome; Veterinary medicine; Zoology; Ecology; Environmental health; Virology; Microbiology; Genetics; Population; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001344861,0.00009359782,0.0001949649,0.00003410505,0.0001190326,0.000005962416,0.00008005314,0.00008295973,0.0004132873],"category_scores_gemma":[0.00002170997,0.00006254289,0.00003328015,0.0001164341,0.0001377879,0.00003943259,0.00003325536,0.00006467535,0.0001003838],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007572853,"about_ca_system_score_gemma":0.00001485735,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001109662,"about_ca_topic_score_gemma":0.000009143373,"domain_scores_codex":[0.9994158,0.00008309259,0.000215339,0.0001363291,0.00002042216,0.0001290453],"domain_scores_gemma":[0.9995861,0.00006149797,0.00007081014,0.0001799831,0.00008457136,0.00001703042],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00008553396,0.0003232503,0.05216224,0.0000171387,0.0001597435,9.70718e-7,0.004250643,0.000004654633,0.9324687,0.00004413267,0.00005983462,0.01042315],"study_design_scores_gemma":[0.0008081616,0.0007658419,0.8997467,0.00003062649,0.000159328,0.00001338829,0.0006024661,0.000009523782,0.08669135,0.00004307226,0.01101743,0.0001121443],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976245,0.0001650883,0.001318505,0.0001526241,0.0001674039,0.0003144416,0.00006143312,0.00001283979,0.0001831381],"genre_scores_gemma":[0.9993929,0.00002259833,0.00005007665,0.00006219075,0.0000238951,0.000008980947,0.00003877979,0.00000852011,0.0003920034],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8475844,"threshold_uncertainty_score":0.4525207,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009592784336674412,"score_gpt":0.2326409992646806,"score_spread":0.2230482149280062,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}