{"id":"W2801668680","doi":"10.1186/s12864-018-4733-7","title":"Valine-glutamine (VQ) motif coding genes are ancient and non-plant-specific with comprehensive expression regulation by various biotic and abiotic stresses","year":2018,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Plant Gene Expression Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":82,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"U.S. Forest Service; National Research Foundation; Concordia University; National Research Foundation Singapore; Joint Genome Institute; U.S. Department of Agriculture; U.S. Department of Energy","keywords":"Biology; Gene; Genetics; Gene family; Biotic stress; Gene duplication; Genome; Gymnosperm; Abiotic stress; Plant evolution; Arabidopsis; Abiotic component; Evolutionary biology; Botany; Ecology","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007279374,0.0002382376,0.0002402994,0.00007660586,0.0001990374,0.00007325396,0.000123351,0.0001471851,0.000009926505],"category_scores_gemma":[0.00001532263,0.0001999237,0.00003340171,0.00008861904,0.0001753199,0.000008250934,0.0001631145,0.00006001171,0.000004574561],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000214989,"about_ca_system_score_gemma":0.00003704049,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001188885,"about_ca_topic_score_gemma":0.00008243733,"domain_scores_codex":[0.9987671,0.00005561218,0.0002276624,0.0005638907,0.0001376567,0.0002480699],"domain_scores_gemma":[0.9991566,0.00003036635,0.0002022362,0.0003487111,0.0001271607,0.000134957],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001140491,0.00003633914,0.01024691,0.00004468683,0.00003477631,0.000003050721,0.0001071,0.0002339784,0.9821802,0.000001746947,0.006716363,0.0002808163],"study_design_scores_gemma":[0.000833054,0.0001916247,0.02233888,0.00007422068,0.0000584259,0.00006696049,0.0003098468,0.004114004,0.9556071,0.000007411111,0.01606185,0.0003366526],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9885248,0.001928831,0.008971507,0.00003699086,0.00008371336,0.0002046128,0.0002044229,0.00001478361,0.00003035511],"genre_scores_gemma":[0.9932311,0.001500301,0.004247477,0.00008836433,0.0001936271,0.000004555295,0.000495377,0.00002943186,0.0002098053],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02657311,"threshold_uncertainty_score":0.8152651,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01362211047017603,"score_gpt":0.2182350610703576,"score_spread":0.2046129506001816,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}