{"id":"W2801911455","doi":"10.1093/infdis/jiy278","title":"Genotyping and Whole-Genome Sequencing to Identify Tuberculosis Transmission to Pediatric Patients in British Columbia, Canada, 2005–2014","year":2018,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Centre for Disease Control; University of Calgary; University of British Columbia","funders":"Canadian Institutes of Health Research; Killam Trusts; University of British Columbia; Canada Research Chairs; British Columbia Lung Association; British Columbia Centre for Disease Control; BCCDC Foundation for Public Health","keywords":"Genotyping; Whole genome sequencing; Transmission (telecommunications); Genome; Tuberculosis; DNA sequencing; Biology; Mycobacterium tuberculosis; Genetics; Computational biology; Genotype; Medicine; Gene; Computer science; Pathology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000485615,0.0004419365,0.0003003906,0.00114303,0.001620659,0.0008454484,0.0009924363,0.0004027151,0.001494386],"category_scores_gemma":[0.001635198,0.0003452129,0.0002313379,0.003750582,0.0005427214,0.000206053,0.0005450332,0.0007960185,0.0003002005],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01944817,"about_ca_system_score_gemma":0.02709765,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9909673,"about_ca_topic_score_gemma":0.9953247,"domain_scores_codex":[0.9992323,0.00004890925,0.00005662242,0.0001246868,0.0002667823,0.0002707133],"domain_scores_gemma":[0.9984036,0.00007178656,0.0002211825,0.00004063568,0.0009510652,0.0003118028],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00007787718,0.0000205026,0.979207,0.00007911706,0.00003948969,0.0004123489,0.0007887389,0.0002422248,0.0005172328,0.00009414453,0.005760684,0.01276067],"study_design_scores_gemma":[0.00001087439,0.00002292194,0.9936539,0.0001134085,0.00003141243,0.0004385414,0.001363577,0.0003577127,0.0002010692,0.00001810146,0.00377946,0.000008983056],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9757621,0.004578549,0.0005001776,0.0009153821,0.00004069645,0.0001009855,0.01164102,0.00005219874,0.006408895],"genre_scores_gemma":[0.9903281,0.002448252,0.0008350679,0.0004627649,0.00001207591,0.00003249922,0.004132863,0.00001991934,0.00172844],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01944817,"threshold_uncertainty_score":0.141107,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01022508582186421,"score_gpt":0.2769317847391613,"score_spread":0.2667066989172971,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}