{"id":"W2802661726","doi":"10.7554/elife.34292","title":"Microbial eukaryotes have adapted to hypoxia by horizontal acquisitions of a gene involved in rhodoquinone biosynthesis","year":2018,"lang":"en","type":"article","venue":"eLife","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":69,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; National Institutes of Health; Mae Fah Luang University; Mississippi State University; Killam Trusts; Dalhousie University","keywords":"Gene; Horizontal gene transfer; Biology; Organelle; Mitochondrion; Electron transport chain; Bacteria; Fumarate reductase; Protist; Genetics; Genome; Cell biology; Biochemistry; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001503762,0.0001549476,0.0001985507,0.00007571038,0.00005005321,0.00001253396,0.0002232459,0.0001427851,0.00006494458],"category_scores_gemma":[0.0001275642,0.0001566028,0.00006917993,0.0001331544,0.00007919766,0.000003977578,0.0001100713,0.00004727034,0.00002433977],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000162188,"about_ca_system_score_gemma":0.00009721577,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001491083,"about_ca_topic_score_gemma":0.0003387059,"domain_scores_codex":[0.9989843,0.0000350726,0.0002482941,0.0003345063,0.0001271131,0.0002707349],"domain_scores_gemma":[0.9993845,0.00001279111,0.00007165864,0.0002874722,0.0001257533,0.0001177828],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001557043,0.0001273333,0.00007982591,0.000007965618,0.00002523526,0.000001761335,0.00009069771,7.907192e-7,0.9969379,0.00002385017,0.00212592,0.0004230134],"study_design_scores_gemma":[0.0004014306,0.0005924241,0.0001635833,0.00003201236,0.00001375951,0.000006713955,0.0001410977,0.00001923643,0.9887186,0.00002071123,0.009706475,0.000183935],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9944569,0.0002285505,0.004076947,0.0001961295,0.0001083414,0.0002027498,0.0002480784,0.00001221176,0.0004700244],"genre_scores_gemma":[0.9953399,0.00006188724,0.003546183,0.000588867,0.0001907683,0.00002569392,0.00009689531,0.00002424134,0.0001255836],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008219281,"threshold_uncertainty_score":0.6386075,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00970046694724123,"score_gpt":0.2366386010020269,"score_spread":0.2269381340547857,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}