{"id":"W2802839248","doi":"10.7554/elife.34655","title":"Distinct chromatin functional states correlate with HIV latency reactivation in infected primary CD4+ T cells","year":2018,"lang":"en","type":"article","venue":"eLife","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":203,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Center for AIDS Research, University of California, San Diego; National Center for Research Resources; National Institute of Dental and Craniofacial Research; California HIV/AIDS Research Program; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; University of California, San Francisco; Cancerfonden; Center for AIDS Research, University of Washington; National Institute on Drug Abuse; Svenska Forskningsrådet Formas; National Cancer Institute; National Institutes of Health; National Institute of General Medical Sciences","keywords":"Virology; Virus latency; Latency (audio); Biology; Chromatin; Human immunodeficiency virus (HIV); Reversion; Virus; Immunology; Phenotype; Genetics; Viral replication; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000125153,0.0001185265,0.0001466524,0.00009608151,0.0001188074,0.00001021349,0.00005602834,0.00009208236,0.001024005],"category_scores_gemma":[0.00003682719,0.00008529453,0.00002113952,0.0001698884,0.0001718953,0.00009446953,0.00003385527,0.0001934645,0.00450409],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009512319,"about_ca_system_score_gemma":0.000118559,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001516673,"about_ca_topic_score_gemma":0.0001932698,"domain_scores_codex":[0.999177,0.0001122811,0.0001671556,0.0002059667,0.00005999413,0.0002775693],"domain_scores_gemma":[0.9995466,0.0001230104,0.00006383306,0.0001434816,0.00009668483,0.00002636974],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001973951,0.001136954,0.5170591,0.00004190752,0.0004113266,0.00007019575,0.00121882,0.00002434944,0.4309531,0.0001290049,0.03910781,0.007873389],"study_design_scores_gemma":[0.002207729,0.0005245709,0.9418436,0.00004165488,0.00001154812,0.00001541133,0.00003016555,0.0000156509,0.04015311,0.00002363914,0.0150165,0.0001163939],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9947385,0.0001300171,0.0002461345,0.0001621725,0.0001585109,0.0002244631,0.0000638952,0.00006346512,0.004212877],"genre_scores_gemma":[0.9946883,0.00002860219,0.0001007256,0.00006816658,0.00003795428,0.00003824089,0.001686584,0.00001160045,0.003339879],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4247845,"threshold_uncertainty_score":0.9998892,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008566871223548538,"score_gpt":0.2166074441373678,"score_spread":0.2080405729138192,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}