{"id":"W2802839248","doi":"10.7554/elife.34655","title":"Distinct chromatin functional states correlate with HIV latency reactivation in infected primary CD4+ T cells","year":2018,"lang":"en","type":"article","venue":"eLife","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":203,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Center for AIDS Research, University of California, San Diego; National Center for Research Resources; National Institute of Dental and Craniofacial Research; California HIV/AIDS Research Program; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; University of California, San Francisco; Cancerfonden; Center for AIDS Research, University of Washington; National Institute on Drug Abuse; Svenska Forskningsrådet Formas; National Cancer Institute; National Institutes of Health; National Institute of General Medical Sciences","keywords":"Virology; Virus latency; Latency (audio); Biology; Chromatin; Human immunodeficiency virus (HIV); Reversion; Virus; Immunology; Phenotype; Genetics; Viral replication; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001209118,0.0001339775,0.0001292377,0.0003248109,0.0001169618,0.0003780548,0.0001234927,0.0002012836,0.003158977],"category_scores_gemma":[0.0002029525,0.0001417401,0.0001047118,0.0001696712,0.0002543765,0.0001734502,0.0001509842,0.0004375154,0.0004960374],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001317339,"about_ca_system_score_gemma":0.00008672057,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002859042,"about_ca_topic_score_gemma":0.0004129583,"domain_scores_codex":[0.9998894,0.00001319803,0.000007277238,0.00003287146,0.00001444413,0.00004280976],"domain_scores_gemma":[0.9997961,0.00005054065,0.00005288847,0.00002319452,0.00002507906,0.00005228741],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000328819,0.00004461717,0.01247627,0.00002476097,0.000009721062,0.000055963,0.00007001369,0.00004938256,0.9850124,0.00005862624,0.00004480649,0.001824602],"study_design_scores_gemma":[0.00003871148,0.0009907602,0.592477,0.00001140467,0.00004145143,0.0008683017,0.0004212253,0.000720504,0.4026761,0.0003262568,0.001413971,0.00001433942],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975889,0.0007196324,0.0005525238,0.00002491271,0.000005256799,0.0000122727,0.0003028239,0.00002695418,0.0007666813],"genre_scores_gemma":[0.9982992,0.0001957985,0.0002420901,0.00002126868,0.000004823995,0.00001571781,0.0004436121,0.000005163461,0.0007723131],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003158977,"threshold_uncertainty_score":0.01056784,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008566871223548538,"score_gpt":0.2166074441373678,"score_spread":0.2080405729138192,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}