{"id":"W2803413988","doi":"10.1016/j.vetmic.2018.05.011","title":"Comparative sequence analysis of the capsular polysaccharide loci of Actinobacillus pleuropneumoniae serovars 1–18, and development of two multiplex PCRs for comprehensive capsule typing","year":2018,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":80,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; Hungarian Scientific Research Fund; Imperial College London; Wellcome Trust; Royal Veterinary College; Zoetis; London School of Hygiene and Tropical Medicine","keywords":"Actinobacillus pleuropneumoniae; Biology; Pleuropneumonia; Serotype; Typing; Multiplex polymerase chain reaction; Microbiology; Multiplex; Amplicon; Virology; Gene; Polymerase chain reaction; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002067557,0.000201862,0.0007098775,0.0002998858,0.0002404464,0.0000041627,0.0002762699,0.0001482108,0.0001674016],"category_scores_gemma":[0.00004097162,0.0001585088,0.0001848026,0.0004532553,0.00144552,0.00004348879,0.0003316037,0.0001403848,0.00000916212],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004716979,"about_ca_system_score_gemma":0.0001920791,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005343417,"about_ca_topic_score_gemma":0.0001622871,"domain_scores_codex":[0.9983608,0.0003436051,0.0005750253,0.0003569537,0.00001766672,0.0003459673],"domain_scores_gemma":[0.9985709,0.0001871941,0.0003927487,0.0003471867,0.0004731102,0.0000288136],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003091246,0.0001200089,0.0007111643,0.00008697029,0.001669877,8.142205e-7,0.001720603,0.0000471937,0.9947963,0.00006190832,0.00008715827,0.0003888551],"study_design_scores_gemma":[0.001075773,0.000561215,0.005028429,0.00003840233,0.0002598792,0.00009817435,0.000667965,0.00009086719,0.989361,0.000007766013,0.002647759,0.0001627024],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997394,0.000606827,0.0005100782,0.00001988587,0.0001938448,0.0004468567,0.000792913,0.00001452923,0.00002104951],"genre_scores_gemma":[0.9988789,0.00002125625,0.0008334437,0.00003234843,0.000009094039,0.00001879253,0.0001475499,0.00001044496,0.00004814996],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005435256,"threshold_uncertainty_score":0.6463801,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1732496316307821,"score_gpt":0.3778605477839025,"score_spread":0.2046109161531205,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}