{"id":"W2803986511","doi":"10.3390/biom8020029","title":"Critical Assessment of Methods to Quantify Biofilm Growth and Evaluate Antibiofilm Activity of Host Defence Peptides","year":2018,"lang":"en","type":"article","venue":"Biomolecules","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":293,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Killam Trusts; Cystic Fibrosis Canada","keywords":"Biofilm; Microbiology; Bacteria; Pseudomonas aeruginosa; Crystal violet; Staphylococcus aureus; Biology; Antibiotics; Staining; Chemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.007364476,0.002269452,0.001045144,0.002189667,0.0008784721,0.001337998,0.001310055,0.00157798,0.002115148],"category_scores_gemma":[0.005639071,0.001100214,0.0007677375,0.001192667,0.00114933,0.001215582,0.001544164,0.002028382,0.001149319],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001125311,"about_ca_system_score_gemma":0.001131437,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001425452,"about_ca_topic_score_gemma":0.00282251,"domain_scores_codex":[0.9932325,0.001967797,0.0004528525,0.0008208339,0.003176715,0.0003493168],"domain_scores_gemma":[0.9928294,0.00287974,0.0008575063,0.0005583884,0.002639445,0.0002356055],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009969715,0.00008398746,0.0008193261,0.0009401902,0.00004145984,0.00008265523,0.0002361354,0.0004266376,0.9827206,0.0005335511,0.0004221147,0.01359368],"study_design_scores_gemma":[0.00001535786,0.0005048133,0.004721834,0.0001937015,0.00006970593,0.0003893822,0.0002038506,0.005276856,0.976254,0.0003600338,0.01192528,0.00008519016],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.239008,0.0319154,0.7071518,0.001305757,0.0007541484,0.003709596,0.002254039,0.002491412,0.01140969],"genre_scores_gemma":[0.2359735,0.0238401,0.7227623,0.0005026499,0.0001659713,0.007221577,0.002445696,0.0004737419,0.006614399],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.007364476,"threshold_uncertainty_score":0.03894758,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03264780302021356,"score_gpt":0.3949472536890264,"score_spread":0.3622994506688128,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}