{"id":"W2804240288","doi":"10.1128/genomea.00416-18","title":"First Complete Genome Sequence of Yersinia massiliensis","year":2018,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Yersinia bacterium, plague, ectoparasites research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency","funders":"","keywords":"Biology; Whole genome sequencing; Plasmid; Genome; Genetics; Chromosome; DNA sequencing; Computational biology; Sequence (biology); Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002488676,0.0002050204,0.0002296874,0.0001028512,0.0001805971,0.0000313191,0.000499242,0.0001226595,0.0003613837],"category_scores_gemma":[0.00005172256,0.0002138302,0.00008823544,0.0002466387,0.0004240266,0.000009992566,0.0003081435,0.00008749605,0.0003662126],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006648925,"about_ca_system_score_gemma":0.0001203665,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005589931,"about_ca_topic_score_gemma":0.00005884593,"domain_scores_codex":[0.9982241,0.00005571143,0.000327006,0.0005086336,0.0003481407,0.0005364318],"domain_scores_gemma":[0.9986663,0.00001092181,0.0001363788,0.0006685493,0.000374813,0.000143064],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001438423,0.00006844447,0.009182382,0.00003688004,0.00009620464,0.000005772283,0.0001473676,0.00002127473,0.9896656,0.000007966642,0.0005213979,0.0001028863],"study_design_scores_gemma":[0.001200879,0.002001564,0.1067837,0.00002984745,0.00003462092,0.00003460635,0.0001123574,0.0001290324,0.03877639,0.00003778347,0.850318,0.0005411647],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9936427,0.0002478192,0.0004128,0.0001454534,0.0002264505,0.0003099941,0.001033235,0.00001314236,0.003968338],"genre_scores_gemma":[0.9953721,0.0001362537,0.001159506,0.0002535823,0.0002964444,0.00001634782,0.00110449,0.00002769998,0.001633587],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9508892,"threshold_uncertainty_score":0.8719743,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0400914430342066,"score_gpt":0.2986429455369611,"score_spread":0.2585515025027545,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}