{"id":"W2804774154","doi":"10.1128/genomea.00392-18","title":"Genome Sequences of 13 Isolates of Salmonella enterica Serovar Typhimurium var. Copenhagen Obtained from Wild Pigeons in Canada","year":2018,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency; McGill University","funders":"Canadian Food Inspection Agency; Public Health Agency; Genome Canada","keywords":"Biology; Salmonella enterica; Serotype; Salmonella; Virulence; Plasmid; Microbiology; Lineage (genetic); Pathogenicity island; Genome; Host (biology); Pathogenicity; Whole genome sequencing; Genetics; Bacteria; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002510254,0.0002161729,0.000502724,0.00002410925,0.00007927421,0.00001130063,0.0005545309,0.00009081248,0.00267974],"category_scores_gemma":[0.00003057016,0.0001071164,0.0000699154,0.0004041587,0.0001529725,0.00008756511,0.0001550593,0.00008951995,0.00008503064],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001496652,"about_ca_system_score_gemma":0.0001346721,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.7169268,"about_ca_topic_score_gemma":0.5234485,"domain_scores_codex":[0.9980636,0.0001593383,0.0006656931,0.0004211261,0.0002174814,0.0004727164],"domain_scores_gemma":[0.9990924,0.0001591763,0.0003415194,0.0001471568,0.0001520878,0.0001076568],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00009302564,0.0000670408,0.1739451,0.000007900441,0.00005263451,0.000005963759,0.0002129326,0.00001683687,0.8248559,0.000003256598,0.0002175728,0.0005217964],"study_design_scores_gemma":[0.0002762314,0.000536058,0.9751355,0.00002583881,0.00002081681,0.000001836299,0.0006935989,0.00003902016,0.004684162,0.0002437444,0.01809741,0.0002457699],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963321,0.0007801069,0.000006491129,0.0002495798,0.0002092444,0.0002276142,0.0007482024,0.00001183514,0.001434827],"genre_scores_gemma":[0.998543,0.0001812881,0.000105507,0.0004024739,0.0001554511,0.00001050319,0.0003892738,0.000002149231,0.0002103086],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8201718,"threshold_uncertainty_score":0.9982319,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02085640465093383,"score_gpt":0.2198351455430909,"score_spread":0.198978740892157,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}