{"id":"W2804774154","doi":"10.1128/genomea.00392-18","title":"Genome Sequences of 13 Isolates of Salmonella enterica Serovar Typhimurium var. Copenhagen Obtained from Wild Pigeons in Canada","year":2018,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency; McGill University","funders":"Canadian Food Inspection Agency; Public Health Agency; Genome Canada","keywords":"Biology; Salmonella enterica; Serotype; Salmonella; Virulence; Plasmid; Microbiology; Lineage (genetic); Pathogenicity island; Genome; Host (biology); Pathogenicity; Whole genome sequencing; Genetics; Bacteria; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001520552,0.0004062715,0.0003075762,0.002012794,0.0009552636,0.0006118978,0.0003042589,0.0002144373,0.001316853],"category_scores_gemma":[0.0003906281,0.0001857324,0.0003988975,0.002915108,0.0003697014,0.00009231192,0.0003370053,0.0003530734,0.0003365526],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.004437604,"about_ca_system_score_gemma":0.00603072,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.7913665,"about_ca_topic_score_gemma":0.908252,"domain_scores_codex":[0.9997818,0.000006736504,0.00001154053,0.00005831318,0.000067439,0.00007418941],"domain_scores_gemma":[0.9995036,0.00004023804,0.00006810304,0.00002182736,0.0002338339,0.0001323152],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002241728,0.0001905858,0.3275415,0.0008629779,0.0002755606,0.001830967,0.00461392,0.001724228,0.6138166,0.0006142478,0.00389917,0.04238851],"study_design_scores_gemma":[0.00001787062,0.0001001654,0.9827754,0.00003308591,0.00007212058,0.0003287795,0.001106898,0.0002043597,0.006579586,0.0000260008,0.008740488,0.00001523752],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9353327,0.0006597215,0.0007395686,0.0000847047,0.00001295097,0.0001081961,0.05992606,0.00005669439,0.003079399],"genre_scores_gemma":[0.8801138,0.0008729644,0.00451606,0.0001498426,0.00000728816,0.00006397341,0.109819,0.0000460351,0.00441106],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2086335,"threshold_uncertainty_score":0.4197244,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02085640465093383,"score_gpt":0.2198351455430909,"score_spread":0.198978740892157,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}