{"id":"W2805452148","doi":"10.1186/s12864-018-4604-2","title":"Comparative genomic, transcriptomic, and proteomic reannotation of human herpesvirus 6","year":2018,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Cytomegalovirus and herpesvirus research","field":"Medicine","cited_by":56,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"National Institute of General Medical Sciences; National Heart, Lung, and Blood Institute; University of California, San Francisco; National Institute of Allergy and Infectious Diseases; Dr. Miriam and Sheldon G. Adelson Medical Research Foundation","keywords":"Biology; Genome; Genetics; Genomics; Population; Germline; Proteomics; RefSeq; Gene; Population genomics; Alu element; Human genome; Computational biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002918804,0.0001698632,0.0004664565,0.0001791659,0.000154869,0.00002812335,0.00010916,0.0001086322,0.0002014602],"category_scores_gemma":[0.00001457852,0.0001609312,0.00008642656,0.0001303563,0.0004260751,0.00007009754,0.00005050014,0.0001822417,0.0001086244],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001363656,"about_ca_system_score_gemma":0.0002346462,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003194861,"about_ca_topic_score_gemma":0.000720586,"domain_scores_codex":[0.9987621,0.00005806713,0.0004022259,0.0003181371,0.0001818381,0.0002776443],"domain_scores_gemma":[0.9991904,0.00003320513,0.000120282,0.0003062489,0.0001937223,0.0001560717],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000851602,0.0001097018,0.007046122,0.0001334544,0.00006956328,0.000002413099,0.00402128,0.000002000414,0.9850546,0.0006008376,0.0003568954,0.001751571],"study_design_scores_gemma":[0.004985052,0.001694648,0.2028468,0.00008063787,0.0001490913,0.00004839954,0.001003854,0.00152839,0.7670574,0.0009242553,0.01930429,0.0003771934],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9938024,0.0003158224,0.0003261442,0.00007863282,0.00005413364,0.0009430121,0.00003618126,0.00003055517,0.004413131],"genre_scores_gemma":[0.9944941,0.0000719024,0.004312578,0.00009179021,0.0002623546,0.0000265517,0.00002298257,0.00003146052,0.0006862401],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2179972,"threshold_uncertainty_score":0.6562583,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07446154371678743,"score_gpt":0.3490691332921551,"score_spread":0.2746075895753676,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}