{"id":"W2805571819","doi":"10.1101/236448","title":"A phylogenomic framework and timescale for comparative studies of tunicates","year":2017,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Marine Ecology and Invasive Species","field":"Environmental Science","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"Centre National de la Recherche Scientifique; Agence Nationale de la Recherche; Centre Méditerranéen de l’Environnement et de la Biodiversité; Laboratoire d'Excellence TULIP; Ministère de l'Économie, de la Science et de l'Innovation - Québec; Compute Canada","keywords":"Biology; Phylogenetic tree; Chordate; Vertebrate; Evolutionary biology; Clade; Phylogenetics; Tunicate; Ciona; Lineage (genetic); Ciona intestinalis; Molecular clock; Sister group; Deuterostome; Paleontology; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003140245,0.0005904045,0.0008000294,0.004920586,0.001072529,0.002591501,0.0007086735,0.0006688266,0.003215686],"category_scores_gemma":[0.008051702,0.0004009064,0.0009845949,0.004282637,0.0008441222,0.001788601,0.002553883,0.001011482,0.0004996353],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001180019,"about_ca_system_score_gemma":0.0008738443,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003115241,"about_ca_topic_score_gemma":0.001690267,"domain_scores_codex":[0.9989881,0.0003737164,0.00005203878,0.0003996977,0.0000798382,0.0001066738],"domain_scores_gemma":[0.9975172,0.001097971,0.0004376173,0.000282997,0.0002875791,0.0003766712],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00117186,0.0002143714,0.3398326,0.001814668,0.00174118,0.001547758,0.004736606,0.06063056,0.1305563,0.238199,0.006426109,0.2131291],"study_design_scores_gemma":[0.00007664422,0.0004130706,0.3986331,0.0004788689,0.0006436471,0.001360384,0.003557553,0.2995117,0.004871014,0.2435684,0.04674289,0.0001428144],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5899769,0.008907,0.3807468,0.001337207,0.0001224597,0.0002106721,0.009200235,0.001323038,0.008175693],"genre_scores_gemma":[0.8686157,0.001841482,0.1212204,0.0001584979,0.0001115737,0.000359832,0.006699351,0.0002957674,0.000697394],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004920586,"threshold_uncertainty_score":0.0166074,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04770556221974952,"score_gpt":0.282748264153103,"score_spread":0.2350427019333535,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}