{"id":"W2805690175","doi":"10.1186/s12864-018-4667-0","title":"Identification of new loci involved in the host susceptibility to Salmonella Typhimurium in collaborative cross mice","year":2018,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":38,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; Association Instituts Carnot; AgroParisTech; Agence Nationale de la Recherche","keywords":"Biology; Quantitative trait locus; Salmonella; Genetics; Typhoid fever; Allele; Population; Serotype; Spleen; Chromosome; Microbiology; Immune system; Gene; Bacteria; Immunology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00109837,0.0001059055,0.0001989978,0.00001830994,0.00005424915,0.00003288145,0.0004100254,0.0001125939,0.00004004982],"category_scores_gemma":[0.0002831638,0.0000440051,0.00004293445,0.0006695337,0.0001335428,0.00005056249,0.00006855148,0.00008190953,0.00006679373],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006647575,"about_ca_system_score_gemma":0.00004487976,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001652095,"about_ca_topic_score_gemma":0.07084523,"domain_scores_codex":[0.998628,0.0002865208,0.0004613675,0.0003124154,0.00008504176,0.0002267232],"domain_scores_gemma":[0.9992133,0.0003339026,0.0001505437,0.0001270188,0.0001217849,0.0000535013],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001268899,0.00005929431,0.4779616,0.000003976693,0.000001997386,3.732923e-7,0.001944696,0.00002453134,0.5187315,0.00008289753,0.0004068232,0.0006554131],"study_design_scores_gemma":[0.0001331396,0.0001485335,0.9724832,0.00000394056,0.000002790379,5.756491e-7,0.001931677,0.00004511647,0.02232492,0.001412591,0.00141818,0.00009537779],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984732,0.00009213601,0.00002636566,0.0007038724,0.0001213727,0.0004070886,0.00003436402,0.000008343138,0.0001333076],"genre_scores_gemma":[0.999045,0.0000201019,0.0001793749,0.0003918916,0.0002301742,0.00001069096,0.00002455791,9.436152e-7,0.00009729125],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4964066,"threshold_uncertainty_score":0.9461094,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0436065138619989,"score_gpt":0.2930175557123736,"score_spread":0.2494110418503747,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}