{"id":"W2806143177","doi":"10.1186/s12985-018-0996-5","title":"Laboratory testing and phylogenetic analysis during a mumps outbreak in Ontario, Canada","year":2018,"lang":"en","type":"article","venue":"Virology Journal","topic":"Virology and Viral Diseases","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Mount Sinai Hospital; Canada Research Chairs; Manitoba Health; Public Health Ontario; Hospital for Sick Children","funders":"","keywords":"Outbreak; Serology; Virology; Biology; Genotyping; Mumps virus; Genotype; Antibody; Virus; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004207759,0.0003773513,0.0002919969,0.001530567,0.001946078,0.0009037929,0.0008844821,0.0003232161,0.0009121222],"category_scores_gemma":[0.001887556,0.0002865258,0.0002247251,0.001844121,0.0007482782,0.0002075676,0.0005691175,0.000392487,0.0001360723],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01811833,"about_ca_system_score_gemma":0.01525968,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.971678,"about_ca_topic_score_gemma":0.972719,"domain_scores_codex":[0.9991013,0.00004734214,0.00003768172,0.0001061889,0.0003967653,0.0003108689],"domain_scores_gemma":[0.9983303,0.00008853035,0.0002382359,0.0000266615,0.001050324,0.0002659975],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000257528,0.00006616865,0.983461,0.00006379058,0.000026793,0.001360088,0.002208887,0.000212025,0.004438215,0.0000697067,0.000964553,0.006871166],"study_design_scores_gemma":[0.000007913168,0.00007705332,0.9937581,0.00002745525,0.00001708066,0.0004491392,0.002772947,0.0005046334,0.0007864403,0.00001275161,0.001577404,0.000009096664],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961887,0.0003177799,0.0001576831,0.000140581,0.00001151912,0.0000750902,0.000862629,0.00001569118,0.002230305],"genre_scores_gemma":[0.9976737,0.0002499631,0.0003154199,0.0001033009,0.000005648234,0.00001360867,0.0009031392,0.000004640362,0.0007306047],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02832198,"threshold_uncertainty_score":0.1314583,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01113425131762712,"score_gpt":0.2317181100995414,"score_spread":0.2205838587819142,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}