{"id":"W2806146610","doi":"10.1139/gen-2018-0011","title":"Genome survey sequencing of <i>Dioscorea zingiberensis</i>","year":2018,"lang":"en","type":"article","venue":"Genome","topic":"Phytochemical Studies and Bioactivities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Fundamental Research Funds for the Central Universities; National Natural Science Foundation of China","keywords":"Genome; Contig; Biology; Genetics; Whole genome sequencing; Genome size; Microsatellite; Sequence assembly; Reference genome; Gene; Computational biology; Transcriptome; Allele","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000176209,0.0001262081,0.0001772939,0.00001892522,0.00007315854,0.000008143073,0.0001617867,0.00008178466,0.0000296509],"category_scores_gemma":[0.00005494764,0.0001117545,0.00007202168,0.00009585288,0.0002343061,0.000002157865,0.0001852041,0.00004560928,0.00001446169],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002204822,"about_ca_system_score_gemma":0.00004309811,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001409366,"about_ca_topic_score_gemma":0.0001486501,"domain_scores_codex":[0.9991935,0.00003359795,0.0001710133,0.0002554675,0.00009473124,0.0002516332],"domain_scores_gemma":[0.9994469,0.0000127262,0.00007944939,0.0002657769,0.0001399121,0.00005523506],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004878129,0.00001490696,0.00190677,0.00001126822,0.00006362265,5.591108e-7,0.00005783708,0.000001484326,0.9976891,0.000008811778,0.00007656281,0.0001202949],"study_design_scores_gemma":[0.0002390474,0.0003940517,0.08708499,0.000006657664,0.00001543912,0.00000954084,0.00008558872,0.000001772475,0.8956023,0.00009149987,0.01622738,0.0002417386],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9937115,0.0008844342,0.000267157,0.00002123731,0.00009277035,0.00008111129,0.0001122942,0.000008795955,0.004820665],"genre_scores_gemma":[0.9985188,0.0001590186,0.0002786273,0.0001673513,0.0004363557,0.000005265599,0.0001224024,0.00001482184,0.0002973278],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1020868,"threshold_uncertainty_score":0.4557215,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02294448158000056,"score_gpt":0.2398723770382234,"score_spread":0.2169278954582229,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}