{"id":"W2806858495","doi":"10.1002/ece3.3873","title":"Phylogeographic mitogenomics of Atlantic cod<i>Gadus morhua</i>: Variation in and among trans‐Atlantic, trans‐Laurentian, Northern cod, and landlocked fjord populations","year":2018,"lang":"en","type":"article","venue":"Ecology and Evolution","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; Memorial University of Newfoundland","funders":"Natural Sciences and Engineering Research Council of Canada; Fisheries and Oceans Canada; Association of Canadian Universities for Northern Studies; Polar Knowledge Canada","keywords":"Phylogeography; Gadus; Biology; Atlantic cod; Coalescent theory; Haplogroup; Population; Ecology; Fishery; Phylogenetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002704454,0.0001037914,0.0001328224,0.0006242474,0.0003143915,0.0002589389,0.0001139489,0.0001153679,0.0006389834],"category_scores_gemma":[0.0004894693,0.00006789593,0.0001613046,0.0003872463,0.0002195398,0.0001103628,0.0002686995,0.0001711859,0.00008672513],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000321749,"about_ca_system_score_gemma":0.0001949927,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01176849,"about_ca_topic_score_gemma":0.03277581,"domain_scores_codex":[0.9999226,0.00001512754,0.000007303219,0.00003005913,0.00001187556,0.00001302811],"domain_scores_gemma":[0.9996595,0.00006676526,0.0001206477,0.00002644033,0.00005765513,0.0000689758],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003839434,0.00003310773,0.9040667,0.00003085221,0.000141957,0.00006841742,0.001331207,0.0002709225,0.08603851,0.0001417073,0.00009043027,0.007402313],"study_design_scores_gemma":[0.000003834511,0.00003051457,0.9985051,0.000004232411,0.00001639178,0.00005219126,0.0002672918,0.0002817671,0.0006198327,0.00001982675,0.0001966899,0.000002370414],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997905,0.00001194396,0.00002885303,0.00000466222,3.625773e-7,6.403424e-7,0.0000646624,6.181897e-7,0.00009778576],"genre_scores_gemma":[0.9994603,0.00001412182,0.0001463709,0.00001041323,0.000001004219,0.000002319251,0.0002881371,0.000001613138,0.0000758328],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9882315,"threshold_uncertainty_score":0.02340001,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007189915843463943,"score_gpt":0.2021077265252787,"score_spread":0.1949178106818147,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}