{"id":"W2806938803","doi":"10.1016/j.vetmic.2018.06.007","title":"Distinct bacterial metacommunities inhabit the upper and lower respiratory tracts of healthy feedlot cattle and those diagnosed with bronchopneumonia","year":2018,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":95,"is_retracted":false,"has_abstract":false,"ca_institutions":"Agriculture and Agri-Food Canada; Alberta Health Services; University of Calgary","funders":"Genome Alberta; Alberta Livestock and Meat Agency","keywords":"Biology; Microbiology; Pasteurella multocida; Moraxella; Lactobacillus casei; Feedlot; Bovine respiratory disease; Veterinary medicine; Bacteria; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000155972,0.0002296249,0.0003244627,0.0008882923,0.0005500414,0.000592318,0.0001512248,0.0003794969,0.0009425289],"category_scores_gemma":[0.0006932482,0.0001997562,0.0001242733,0.0003418786,0.0005395218,0.000376521,0.0003893353,0.0002267634,0.0001293931],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003557318,"about_ca_system_score_gemma":0.000217974,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007012728,"about_ca_topic_score_gemma":0.01279544,"domain_scores_codex":[0.9997281,0.00003233432,0.00001881829,0.00004857207,0.00003865529,0.0001334511],"domain_scores_gemma":[0.9997024,0.00006008929,0.00008140042,0.000008426621,0.00003238913,0.0001152738],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005189868,0.00006550427,0.9847519,0.000013568,0.00001784025,0.0004338854,0.0008253253,0.00002606522,0.01117771,0.00002495171,0.00003851205,0.002105689],"study_design_scores_gemma":[0.000003277589,0.0001614963,0.9971293,0.000003953697,0.00001028724,0.0006910773,0.001520445,0.00009231122,0.000305949,0.0000161238,0.00006343913,0.000002434404],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999828,0.00005670834,0.00001429991,0.000006215888,0.000001132386,0.000001221104,0.00001883937,5.177237e-7,0.00007289095],"genre_scores_gemma":[0.9998069,0.00003695022,0.00002446326,0.000008347267,0.000003147765,0.000001131692,0.00004858247,3.786762e-7,0.00007004355],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007012728,"threshold_uncertainty_score":0.01394379,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03642646339125134,"score_gpt":0.2952636550225634,"score_spread":0.2588371916313121,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}