{"id":"W2806991189","doi":"10.1099/mic.0.000669","title":"Random sorting of Campylobacter jejuni phase variants due to a narrow bottleneck during colonization of broiler chickens","year":2018,"lang":"en","type":"article","venue":"Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Medical Research Council","keywords":"Biology; Phase variation; Campylobacter jejuni; Population bottleneck; Colonization; Population; Campylobacter; Bottleneck; Genetics; Gene; Microbiology; Phenotype; Allele; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003802802,0.0001718908,0.000546161,0.00003644369,0.0001148959,0.000006318824,0.000270822,0.0002249719,0.0008172738],"category_scores_gemma":[0.0002581033,0.00007931578,0.0001105723,0.0003387192,0.0002261443,0.0000462777,0.0001184969,0.00008809883,0.00005184312],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002023483,"about_ca_system_score_gemma":0.00001326396,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002098567,"about_ca_topic_score_gemma":0.0004169148,"domain_scores_codex":[0.9983096,0.0002793314,0.0005979494,0.000369933,0.00004075107,0.0004024536],"domain_scores_gemma":[0.9990364,0.0002323958,0.0003392684,0.0001094357,0.0001996604,0.00008288043],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004839265,0.0001584842,0.01424759,0.00001201656,0.00002978827,0.000003692728,0.0002774548,0.000003626304,0.9829384,0.00003878754,0.0003958195,0.001410412],"study_design_scores_gemma":[0.00294204,0.002278142,0.2364543,0.00007424714,0.00005026607,0.0002481677,0.0001864151,0.0000330707,0.7531395,0.0002296475,0.00396175,0.0004025159],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984903,0.00007334053,0.00004096625,0.0004214362,0.000299276,0.0002569556,0.0001318226,0.0000306374,0.00025529],"genre_scores_gemma":[0.9988533,0.000007440728,0.000233169,0.000348723,0.0002882773,0.000009321312,0.0001299728,0.000002261222,0.0001275653],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2297989,"threshold_uncertainty_score":0.8948575,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01439182003753275,"score_gpt":0.245370212638051,"score_spread":0.2309783926005182,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}