{"id":"W2807125638","doi":"10.1186/s40168-018-0484-6","title":"Oral microbiota in youth with perinatally acquired HIV infection","year":2018,"lang":"en","type":"article","venue":"Microbiome","topic":"HIV/AIDS oral health manifestations","field":"Medicine","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Center for Advancing Translational Sciences; National Institute of Child Health and Human Development; National Institute of Mental Health; National Institutes of Health; Public Health Agency of Canada; National Institute of Allergy and Infectious Diseases; Harvard T.H. Chan School of Public Health","keywords":"Prevotella; Biology; Tannerella forsythia; Microbiome; Periodontitis; Dysbiosis; Cohort; Immunology; Internal medicine; Medicine; Gut flora","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000165467,0.0001756085,0.0002502783,0.0003852761,0.0001046875,0.00002282881,0.00007530596,0.0001085254,0.000177628],"category_scores_gemma":[0.00002116414,0.0001511407,0.00003913041,0.0007431536,0.0002292624,0.0001423327,0.00004407386,0.0001228615,0.0002358941],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002370798,"about_ca_system_score_gemma":0.0001866159,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009024628,"about_ca_topic_score_gemma":0.0015046,"domain_scores_codex":[0.9988636,0.00004557831,0.0002813195,0.0003244723,0.00008878444,0.0003962849],"domain_scores_gemma":[0.9993253,0.00001288161,0.0000719768,0.0003130628,0.0001528684,0.0001238798],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0008253271,0.0005860701,0.07354021,0.0003421851,0.00005460828,0.0001479798,0.007101387,0.000001913956,0.9059023,0.00008769688,0.008981823,0.002428506],"study_design_scores_gemma":[0.01838661,0.006994269,0.7422828,0.001928879,0.0003218982,0.002750466,0.001799704,0.0002864477,0.08565681,0.00003408402,0.1380565,0.001501517],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963948,0.00002851112,0.0002570781,0.0009770864,0.0001253627,0.0005075228,0.0001108657,0.0001162585,0.001482532],"genre_scores_gemma":[0.9901893,0.000006975674,0.003976387,0.0006080226,0.0001299157,0.00001166063,0.0004649072,0.00003109218,0.004581807],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8202455,"threshold_uncertainty_score":0.616334,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02273911979560042,"score_gpt":0.2981274873841369,"score_spread":0.2753883675885365,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}