{"id":"W2807304129","doi":"10.1016/j.virol.2018.05.015","title":"Characterization of molecular attributes that influence LINE-1 restriction by all seven human APOBEC3 proteins","year":2018,"lang":"en","type":"article","venue":"Virology","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":16,"is_retracted":false,"has_abstract":false,"ca_institutions":"National Research Council Canada; University of Ottawa","funders":"Canadian Institutes of Health Research","keywords":"Biology; Retrotransposon; DNA; Restriction enzyme; Long terminal repeat; Genetics; Nucleic acid; Genome; APOBEC3G; RNA; Computational biology; Gene; Cytidine deaminase; Transposable element","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002306705,0.0002233314,0.0001678751,0.0002822934,0.0001366142,0.0003074768,0.0001614523,0.000210106,0.001196698],"category_scores_gemma":[0.0004520118,0.0001035878,0.0002002104,0.000257116,0.0002904329,0.0001850538,0.0001182752,0.0003846892,0.0002212393],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002526703,"about_ca_system_score_gemma":0.0001914647,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001878428,"about_ca_topic_score_gemma":0.001590542,"domain_scores_codex":[0.9998454,0.00004523742,0.00001179409,0.00002849681,0.0000385926,0.00003046832],"domain_scores_gemma":[0.9996163,0.0001651043,0.00008455999,0.00003165431,0.00004295475,0.0000593836],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001402218,0.0000142974,0.001489401,0.00001132123,0.000008099451,0.00003056821,0.0000178047,0.00008083567,0.9973968,0.00006052667,0.00001343218,0.0007367926],"study_design_scores_gemma":[0.00002059457,0.0003492285,0.08029263,0.000005246221,0.00006466988,0.0005041313,0.0001095152,0.002332672,0.9148488,0.0001125067,0.001345839,0.0000142186],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.99839,0.0001731042,0.0008000135,0.00001710583,0.000003250576,0.000008691793,0.0001342171,0.0000107966,0.0004629054],"genre_scores_gemma":[0.9987825,0.00005389671,0.00052759,0.000013275,0.000002507344,0.000004975158,0.0002375876,0.00001164451,0.0003659594],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001878428,"threshold_uncertainty_score":0.004003406,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01835474744323795,"score_gpt":0.229683605915279,"score_spread":0.211328858472041,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}