{"id":"W2808735341","doi":"10.1101/352922","title":"Recent secondary contacts, background selection and variable recombination rates shape genomic diversity in the model species <i>Anolis carolinensis</i>","year":2018,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"York University; New York University Abu Dhabi","keywords":"Biology; Evolutionary biology; Background selection; Genetic diversity; Gene density; Population; Anolis; Population genomics; Natural selection; Genome; Genomics; Genome evolution; Genetics; Ecology; Gene; Lizard","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001461085,0.0001734728,0.0001457651,0.0009664268,0.0003812214,0.0003260352,0.0002387957,0.0002560875,0.001449924],"category_scores_gemma":[0.0003049253,0.00008714102,0.0001859403,0.0003420128,0.0003145876,0.0001779827,0.0002386345,0.0002199594,0.0001326419],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002820467,"about_ca_system_score_gemma":0.000134077,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00410713,"about_ca_topic_score_gemma":0.007084686,"domain_scores_codex":[0.9999353,0.00001240494,0.000002885497,0.00003143784,0.000007823243,0.00001012023],"domain_scores_gemma":[0.9997584,0.000069994,0.0000881198,0.00001725826,0.00002788564,0.00003837634],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004084094,0.00009414495,0.3227612,0.0001089081,0.0001790666,0.0003667538,0.0005949023,0.003830645,0.6624255,0.000857393,0.0002850764,0.008088057],"study_design_scores_gemma":[0.00001384356,0.0001409204,0.9784556,0.00001087329,0.00007075322,0.0003351608,0.0003275795,0.01172433,0.007612447,0.0004285934,0.000856288,0.00002376157],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994562,0.00003201745,0.0001828992,0.00001126268,4.658353e-7,0.00000176282,0.0001051585,0.000007878608,0.0002022834],"genre_scores_gemma":[0.9994685,0.00001311973,0.0002392511,0.000008494694,0.000001052188,0.000004952638,0.0001729244,0.000005006147,0.00008668472],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00410713,"threshold_uncertainty_score":0.008166432,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02273835374646997,"score_gpt":0.2172823753073641,"score_spread":0.1945440215608941,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}