{"id":"W2808778851","doi":"10.1111/mec.14771","title":"Genome‐wide DNA methylation signatures of infection status in Trinidadian guppies (<i>Poecilia reticulata</i>)","year":2018,"lang":"en","type":"article","venue":"Molecular Ecology","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":52,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; China Scholarship Council","keywords":"Biology; DNA methylation; Epigenetics; Guppy; Poecilia; Genetics; Methylation; Genome; Gene; Evolutionary biology; Gene expression; Fish <Actinopterygii>","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003738918,0.0001751196,0.0002345038,0.0002243884,0.00005415382,0.00001274774,0.0001069653,0.0003648109,0.00006140366],"category_scores_gemma":[0.0004378469,0.0001903015,0.00009947252,0.0002523626,0.0001850179,0.000006244131,0.00009084676,0.000115831,0.00001389114],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004365918,"about_ca_system_score_gemma":0.000101666,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001109099,"about_ca_topic_score_gemma":0.001594987,"domain_scores_codex":[0.9984663,0.0002434969,0.0004034663,0.0004016272,0.0001290091,0.0003561322],"domain_scores_gemma":[0.999137,0.0000370344,0.000179749,0.0003647732,0.0002003696,0.00008107359],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007723589,0.00006277968,0.1223299,0.00001490137,0.00003966627,0.000005088448,0.00008645214,0.0008491452,0.8750966,0.0001556803,0.00002120619,0.001261363],"study_design_scores_gemma":[0.0004572134,0.0005531427,0.4682349,0.000003933548,0.00001551361,8.473804e-7,0.000009129552,0.00007731944,0.5233856,0.0008145634,0.006313197,0.0001347229],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9912481,0.001105933,0.005588888,0.00008171601,0.0002452939,0.0002954042,0.00001171169,0.00001120492,0.001411694],"genre_scores_gemma":[0.9981511,0.0003047095,0.0009661587,0.0001447513,0.000103749,0.00002614182,0.000205472,0.00002671375,0.00007124449],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.351711,"threshold_uncertainty_score":0.7760269,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007043654218907134,"score_gpt":0.2519416185725548,"score_spread":0.2448979643536476,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}