{"id":"W2808841817","doi":"10.1101/350587","title":"Diverse <i>Escherichia coli</i> lineages, from domestic animals and humans in a household, carry colistin resistance gene <i>mcr-1</i> in Ecuador","year":2018,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Public Health Ontario","funders":"Universidad San Francisco de Quito","keywords":"Pulsed-field gel electrophoresis; Multilocus sequence typing; MCR-1; Biology; Escherichia coli; Colistin; Typing; Replicon; Microbiology; Plasmid; Feces; Locus (genetics); Gene; Antibiotic resistance; Veterinary medicine; Genetics; Enterobacteriaceae; Genotype; Antibiotics; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001721086,0.0003008604,0.0002245915,0.000525774,0.0004362375,0.0004264865,0.000263739,0.0002406245,0.001173215],"category_scores_gemma":[0.0006427171,0.0001680226,0.0001105873,0.0004572558,0.0003056929,0.0002397049,0.0003530567,0.0001909428,0.0001077043],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003853866,"about_ca_system_score_gemma":0.0001829094,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009378577,"about_ca_topic_score_gemma":0.009682705,"domain_scores_codex":[0.9998265,0.00003775776,0.00001830988,0.00004747202,0.0000239441,0.00004599484],"domain_scores_gemma":[0.9997696,0.00003249071,0.0001170018,0.00001036607,0.00003076335,0.00003977824],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001074506,0.0000709177,0.9819412,0.0000784474,0.00002764372,0.0046517,0.002212822,0.00003760424,0.004365269,0.00004068447,0.000143729,0.006322469],"study_design_scores_gemma":[0.000005694561,0.0001654519,0.9871376,0.00004165612,0.0000284349,0.004973248,0.00573607,0.00008294032,0.0008414267,0.00002176483,0.0009614224,0.000004322219],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994953,0.0001699685,0.00005838076,0.00002479834,0.000001299981,0.000004652064,0.00004281607,0.000001596531,0.000201268],"genre_scores_gemma":[0.9994459,0.000194064,0.0001193652,0.00002332192,0.000003514551,0.000004608177,0.0000900766,0.000001132971,0.0001180145],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009378577,"threshold_uncertainty_score":0.01864797,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0137583532390232,"score_gpt":0.2270590337467985,"score_spread":0.2133006805077753,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}