{"id":"W2809466659","doi":"10.1080/15592294.2018.1461295","title":"DNA methylation analysis from saliva samples for epidemiological studies","year":2018,"lang":"en","type":"article","venue":"Epigenetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":53,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of Mental Health; National Institutes of Health; DNA Genotek","keywords":"Saliva; Biology; DNA methylation; DNA; Epigenetics; DNA extraction; Methylated DNA immunoprecipitation; Bisulfite sequencing; Methylation; Molecular biology; Polymerase chain reaction; Computational biology; Genetics; Gene; Biochemistry; Gene expression","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002573626,0.0007539853,0.0009300848,0.003110674,0.0007105623,0.000987552,0.0007250856,0.001322766,0.002635996],"category_scores_gemma":[0.003651163,0.0004391914,0.0006400522,0.001910732,0.0004695793,0.0005099837,0.0007287894,0.000985657,0.00142632],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003672398,"about_ca_system_score_gemma":0.0009965147,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002177812,"about_ca_topic_score_gemma":0.004231754,"domain_scores_codex":[0.9981627,0.0007478177,0.0001231694,0.0003349056,0.0005306307,0.0001009057],"domain_scores_gemma":[0.999157,0.0002189119,0.0001379202,0.0001267835,0.0002997543,0.00005961545],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004809224,0.0001927156,0.04534263,0.001234536,0.0002690126,0.0003206968,0.0007384331,0.0006095121,0.8396766,0.001913818,0.002586185,0.1066348],"study_design_scores_gemma":[0.00005839847,0.001110198,0.1389335,0.000520474,0.0006396478,0.002249916,0.001056379,0.006803839,0.7388972,0.005827835,0.1037408,0.0001617446],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.3955209,0.04233145,0.5079416,0.00200307,0.001089649,0.002656254,0.02794116,0.002115163,0.0184007],"genre_scores_gemma":[0.5683354,0.02245573,0.3805516,0.001298022,0.0005283579,0.003339835,0.01184483,0.0002828256,0.01136339],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.003110674,"threshold_uncertainty_score":0.01361078,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09330015414788057,"score_gpt":0.3780574386645614,"score_spread":0.2847572845166808,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}