{"id":"W2809551216","doi":"10.1186/s12864-018-4852-1","title":"Transcriptome alteration in Phytophthora infestans in response to phenazine-1-carboxylic acid production by Pseudomonas fluorescens strain LBUM223","year":2018,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":28,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; Université de Moncton","funders":"Natural Sciences and Engineering Research Council of Canada; New Brunswick Innovation Foundation","keywords":"Phytophthora infestans; Biology; Pseudomonas fluorescens; Transcriptome; Gene; Blight; Microbiology; Genetics; Gene expression; Botany; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005506699,0.0001523367,0.0001597661,0.00006266467,0.0001199969,0.00007453567,0.0001911357,0.00009104474,0.00006427447],"category_scores_gemma":[0.0001161157,0.00008324492,0.00004557068,0.000460895,0.00004481054,0.0002058164,0.00003027638,0.0001754551,0.0000596702],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001856313,"about_ca_system_score_gemma":0.000029696,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003520751,"about_ca_topic_score_gemma":0.01208923,"domain_scores_codex":[0.9987116,0.0002544246,0.0003216592,0.0003193218,0.00009348338,0.0002995511],"domain_scores_gemma":[0.9996526,0.0000593401,0.00005887715,0.00009875924,0.00006191835,0.00006852573],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000653387,0.0001502846,0.001908367,0.000003412884,0.000002383072,0.000001823714,0.0005258231,0.00002618344,0.992457,0.000006367537,0.0005461305,0.003718812],"study_design_scores_gemma":[0.0004652977,0.0007184736,0.4072827,0.00007655457,0.000006901412,0.00003979707,0.001118793,0.0002880316,0.5581129,0.0001094014,0.03132487,0.0004563163],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997506,0.00003115594,0.00003797435,0.001321948,0.0002851088,0.0004223867,0.0002691938,0.00003086605,0.00009533014],"genre_scores_gemma":[0.9987109,0.00002107419,0.0004645578,0.0001564724,0.0002188453,0.00003166632,0.0001403714,0.000002313275,0.0002537431],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4343441,"threshold_uncertainty_score":0.6746076,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02574399689522975,"score_gpt":0.2482356717079164,"score_spread":0.2224916748126866,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}