{"id":"W2809684487","doi":"10.3389/fpls.2018.00987","title":"Genome Scans Reveal Homogenization and Local Adaptations in Populations of the Soybean Cyst Nematode","year":2018,"lang":"en","type":"article","venue":"Frontiers in Plant Science","topic":"Nematode management and characterization studies","field":"Agricultural and Biological Sciences","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; Université de Montréal","funders":"Agriculture and Agri-Food Canada; Government of Canada; Canadian Field Crop Research Alliance; Genome Canada; Syngenta Canada; Saskatchewan Pulse Growers; Grain Farmers of Ontario; Génome Québec","keywords":"Soybean cyst nematode; Biology; Local adaptation; Fixation index; Evolutionary biology; Genetics; Genetic variation; Reproductive isolation; Genome; Genetic structure; Ecology; Population; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005780556,0.0001612,0.0002534882,0.0009623455,0.0002880355,0.0003628247,0.0001791246,0.0002742355,0.0009461927],"category_scores_gemma":[0.0009262176,0.0001618227,0.0003019302,0.0007196434,0.0003743794,0.0002113196,0.0003239855,0.0003790258,0.00009798169],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001984444,"about_ca_system_score_gemma":0.0001727138,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00295424,"about_ca_topic_score_gemma":0.01021378,"domain_scores_codex":[0.9996943,0.00005816446,0.00001877087,0.0001558876,0.00004597064,0.00002675186],"domain_scores_gemma":[0.9994569,0.0002228579,0.000172129,0.00005112131,0.0000388903,0.00005802351],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005665647,0.00005743861,0.7961311,0.0001352194,0.001023219,0.0005911521,0.001092089,0.001751821,0.1730392,0.0004739926,0.0002817489,0.02485644],"study_design_scores_gemma":[0.000008602139,0.00003755038,0.9966488,0.000006159513,0.0001065364,0.0002577837,0.0001836831,0.001101479,0.001121268,0.000180005,0.000341803,0.000006262565],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998762,0.0001670979,0.0006293747,0.00001805542,0.000001145439,0.000002820854,0.0001309284,0.00001647841,0.0002720439],"genre_scores_gemma":[0.9988292,0.00008928777,0.0006483584,0.00002408496,0.000002183752,0.000003814073,0.0002801095,0.000007706124,0.000115253],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00295424,"threshold_uncertainty_score":0.005874097,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02041920541938559,"score_gpt":0.2152141251884157,"score_spread":0.1947949197690301,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}