{"id":"W2809848863","doi":"10.1017/s0950268818001759","title":"Geography but not alternative host species explain the spread of raccoon rabies virus in Vermont","year":2018,"lang":"en","type":"article","venue":"Epidemiology and Infection","topic":"Rabies epidemiology and control","field":"Immunology and Microbiology","cited_by":47,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency","funders":"National Institute of Allergy and Infectious Diseases; Centers for Disease Control and Prevention; National Institutes of Health; New York State Department of Health","keywords":"Rabies; Epizootic; Outbreak; Phylogeography; Carnivore; Geography; Lyssavirus; Biology; Raccoon Dogs; Host (biology); Ecology; Zoology; Wildlife; Rabies virus; Phylogenetic tree; Rhabdoviridae; Virology; Predation","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003219306,0.0002293492,0.0007184123,0.0002187504,0.0003430326,0.000003027654,0.0001632268,0.000504286,0.0003008311],"category_scores_gemma":[0.002614749,0.0001564114,0.0001488257,0.0001563259,0.002504418,0.0001471247,0.00009320028,0.0005556166,0.0001113666],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002229475,"about_ca_system_score_gemma":0.00001962782,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003102978,"about_ca_topic_score_gemma":0.001366695,"domain_scores_codex":[0.9958624,0.002543109,0.0007249641,0.0003965399,0.00001958041,0.0004534465],"domain_scores_gemma":[0.9952618,0.003916228,0.0004163445,0.0002980144,0.00008607271,0.00002148135],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002045007,0.0001390914,0.8253881,0.00002025829,0.0004964506,0.000002319845,0.0007877651,0.00003856386,0.1196387,0.04114906,0.004401449,0.005893266],"study_design_scores_gemma":[0.001116941,0.000790304,0.9359705,0.00003255158,0.00006133673,0.0000379486,0.0001347077,0.00005663069,0.03366157,0.008429498,0.01954305,0.0001649139],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9886284,0.003561492,0.001342277,0.002212947,0.001493639,0.0002992014,0.00002669641,0.00004174968,0.002393555],"genre_scores_gemma":[0.9950045,0.002342932,0.00002500994,0.001919524,0.0001866295,0.00006996665,0.00002517503,0.000008698233,0.0004175319],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1105825,"threshold_uncertainty_score":0.9227631,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0283068403828786,"score_gpt":0.2781773288164746,"score_spread":0.249870488433596,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}