{"id":"W2809875270","doi":"","title":"Variation at 2q35 (PNKD and TMBIM1) influences colorectal cancer risk and identifies a pleiotropic effect with inflammatory bowel disease","year":2016,"lang":"en","type":"article","venue":"Tampere University Institutional Repository (Tampere University)","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute","funders":"","keywords":"Genome-wide association study; Linkage disequilibrium; Single-nucleotide polymorphism; Odds ratio; Inflammatory bowel disease; SNP; Colorectal cancer; Genetics; Genetic association; Genetic predisposition; Biology; Disease; Medicine; Cancer; Internal medicine; Genotype; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts"],"consensus_categories":[],"category_scores_codex":[0.00008575759,0.000316302,0.0003354928,0.0004114285,0.001341633,0.00002680667,0.000143956,0.0001778839,0.00003426662],"category_scores_gemma":[0.0001018216,0.0002534732,0.00008337737,0.0002374549,0.001594202,0.000729903,0.0002971673,0.0002520761,0.00001169561],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009996523,"about_ca_system_score_gemma":0.0003903128,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003698771,"about_ca_topic_score_gemma":0.0004954338,"domain_scores_codex":[0.9983506,0.0002186543,0.0001652905,0.0006124889,0.0003226772,0.000330333],"domain_scores_gemma":[0.9987065,0.0001878737,0.000187628,0.0002078042,0.0003026626,0.000407537],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.004334819,0.00005817973,0.9806207,0.0001081411,0.0006342205,0.001551795,0.0004981314,0.0000375127,0.01110965,0.0007857571,0.00005020098,0.0002109302],"study_design_scores_gemma":[0.004619768,0.0004830159,0.9859035,0.0003845219,0.0009478708,0.0002176508,0.0002914511,0.00003197221,0.0005133773,0.000006539265,0.006336941,0.0002633838],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975057,0.0002042127,0.0001430263,0.0004793837,0.0002045284,0.0004453495,0.0001125655,0.0001374897,0.0007677305],"genre_scores_gemma":[0.9948225,0.001060555,0.00006573765,0.00004756582,0.00008299461,0.00000156883,0.00001447625,0.00001249223,0.003892135],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01059627,"threshold_uncertainty_score":0.9999918,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003684831282901267,"score_gpt":0.1792971680479819,"score_spread":0.1756123367650806,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}