{"id":"W2810017940","doi":"10.1038/s41426-018-0118-x","title":"Comparative genomics of <i>Campylobacter concisus</i> : Analysis of clinical strains reveals genome diversity and pathogenic potential","year":2018,"lang":"en","type":"article","venue":"Emerging Microbes & Infections","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":34,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Biology; Virulence; Genome; Comparative genomics; Microbiology; Campylobacter; Whole genome sequencing; Inflammatory bowel disease; Colitis; Ulcerative colitis; Genetics; Gastrointestinal tract; Disease; Gene; Genomics; Bacteria; Immunology; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000577098,0.0001359491,0.0006696152,0.00005732938,0.000445562,0.00000822579,0.0001620546,0.0001299914,0.0003901099],"category_scores_gemma":[0.00005302698,0.0000709085,0.0003699551,0.0006039231,0.0004760529,0.00006600712,0.0003741196,0.0001208801,0.00000622268],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001608026,"about_ca_system_score_gemma":0.00001012318,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000695525,"about_ca_topic_score_gemma":0.001328007,"domain_scores_codex":[0.9984764,0.0002846725,0.0006301303,0.0003164223,0.0000736626,0.0002187003],"domain_scores_gemma":[0.9989774,0.0002461571,0.000385445,0.00009351218,0.0002082158,0.00008929639],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001650423,0.0001077674,0.4713522,0.000003039495,0.0005224951,4.070639e-7,0.0005626948,0.00003273574,0.5267296,0.0000409313,0.00007375317,0.0005578022],"study_design_scores_gemma":[0.0001403472,0.0002973764,0.9958767,0.000005106415,0.0006334353,0.000005592283,0.0003370339,0.0001021131,0.0007894546,0.00009137361,0.001595747,0.0001257055],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987859,0.0001302461,0.0001299551,0.00008016152,0.0002034851,0.0001186088,0.000304861,0.00002267214,0.00022407],"genre_scores_gemma":[0.9992513,0.0001818564,0.0001175769,0.0001138177,0.0002070322,0.000001717499,0.00008579849,8.632904e-7,0.00004002897],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5259402,"threshold_uncertainty_score":0.427143,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05371287430957015,"score_gpt":0.3128429784687,"score_spread":0.2591301041591298,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}