{"id":"W2810173212","doi":"10.1128/msystems.00007-18","title":"Asymptomatic Intestinal Colonization with Protist<i>Blastocystis</i>Is Strongly Associated with Distinct Microbiome Ecological Patterns","year":2018,"lang":"en","type":"article","venue":"mSystems","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":133,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta; University of Victoria; University of Calgary; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research; Universidad Nacional Autónoma de México; Government of Canada; Consejo Nacional de Ciencia y Tecnología; Human Frontier Science Program; Instituto Mexicano del Seguro Social; University of Alberta","keywords":"Blastocystis; Biology; Microbiome; Colonization; Population; Protist; Feces; Microbiology; Zoology; Ecology; Genetics; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002000371,0.0002432023,0.0003382192,0.00009101308,0.0003609298,0.00005482894,0.0001472451,0.0002146137,0.0004447735],"category_scores_gemma":[0.0002263543,0.000168193,0.00003505743,0.0002764091,0.0003845391,0.00006550094,0.00004098783,0.0001949141,0.0006204488],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001631724,"about_ca_system_score_gemma":0.0001084677,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001435562,"about_ca_topic_score_gemma":0.0008118206,"domain_scores_codex":[0.9986263,0.0002198341,0.000320368,0.0003420625,0.00005865632,0.0004328131],"domain_scores_gemma":[0.9988597,0.0003050519,0.0002566529,0.0002341334,0.00030509,0.00003934001],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001804098,0.0007028123,0.9845369,0.0000749,0.0003992042,0.00005121221,0.0003992883,0.00002090869,0.009363979,0.0002626351,0.003831799,0.000175951],"study_design_scores_gemma":[0.003897183,0.006938688,0.9697772,0.00111173,0.0002739734,0.001656124,0.0002181632,0.0002741237,0.01130056,0.00001465812,0.003906959,0.0006305918],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9842263,0.00002991469,0.01223741,0.00005127225,0.0004627795,0.0008476549,0.0001515574,0.0001925537,0.001800545],"genre_scores_gemma":[0.9980575,5.09537e-7,0.0001166547,0.00007021164,0.00007772923,0.0001800589,0.000300878,0.00002533754,0.00117107],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01475965,"threshold_uncertainty_score":0.7974821,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00867522446195213,"score_gpt":0.2250866643463709,"score_spread":0.2164114398844188,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}