{"id":"W2810266624","doi":"10.1038/s41592-018-0044-9","title":"Genome-wide SWAp-Tag yeast libraries for proteome exploration","year":2018,"lang":"en","type":"article","venue":"Nature Methods","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":212,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Alberta; Université de Montréal","funders":"Nature","keywords":"Proteome; Genome; Yeast; Computational biology; Biology; ENCODE; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005866069,0.0009574676,0.0007481847,0.00114061,0.0007372568,0.001200167,0.0006950235,0.0004329715,0.002850361],"category_scores_gemma":[0.0004269207,0.0005503474,0.0007383121,0.001619637,0.0003015924,0.0005515298,0.001435587,0.001480525,0.001834324],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004558581,"about_ca_system_score_gemma":0.0005879762,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006792643,"about_ca_topic_score_gemma":0.00329509,"domain_scores_codex":[0.99968,0.00003232397,0.00002428782,0.00008683372,0.0001291154,0.00004745629],"domain_scores_gemma":[0.9997899,0.00003851637,0.00002959087,0.00005168157,0.00004780584,0.00004263215],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002412134,0.00003596796,0.0005118608,0.00008352854,0.0000414371,0.00004605706,0.00002636662,0.0003100178,0.9905214,0.0004298961,0.0006173784,0.007134815],"study_design_scores_gemma":[0.00005693594,0.0001167567,0.005099445,0.00001421404,0.0001252119,0.0003452515,0.00008590563,0.004865946,0.9719766,0.001190719,0.01609589,0.00002715196],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.60822,0.004032933,0.3282424,0.0008832609,0.0002560616,0.0005025942,0.04269809,0.006370386,0.00879429],"genre_scores_gemma":[0.6998606,0.003997551,0.2180441,0.0007016807,0.00008827311,0.0006460838,0.06578067,0.001836704,0.009044397],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.002850361,"threshold_uncertainty_score":0.009535372,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03357966866739296,"score_gpt":0.3852419888240606,"score_spread":0.3516623201566677,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}