{"id":"W2810613376","doi":"10.1101/356816","title":"Genomics of <i>Cryptococcus neoformans</i>","year":2018,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Health Sciences Centre; University of Toronto; Sunnybrook Health Science Centre","funders":"Medical Research Council; Wellcome Trust","keywords":"Cryptococcus neoformans; Clade; Biology; Genome; Phylogenetic tree; Evolutionary biology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001310657,0.0002293118,0.0001919292,0.0005051575,0.0002215951,0.0004223788,0.0001412995,0.0002759145,0.0007961213],"category_scores_gemma":[0.0003199198,0.00008425821,0.0002799282,0.0006225369,0.0001242312,0.0001138719,0.0002026033,0.0003143966,0.0002677101],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004231905,"about_ca_system_score_gemma":0.0002449039,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008603248,"about_ca_topic_score_gemma":0.007043383,"domain_scores_codex":[0.9998966,0.00001204934,0.000005053597,0.00003913,0.00002353623,0.00002372891],"domain_scores_gemma":[0.9997935,0.00003978511,0.00007504226,0.00001138116,0.00003832576,0.0000419173],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005771173,0.00009326529,0.1139333,0.0001992989,0.0001312739,0.0004658575,0.0003178466,0.002001754,0.8602334,0.0003001034,0.0008279115,0.02091877],"study_design_scores_gemma":[0.00001064305,0.0002059358,0.9666728,0.00004160756,0.0000584267,0.0008037622,0.0002768722,0.004587585,0.02328715,0.0002445195,0.003795178,0.0000154617],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9940691,0.0003647795,0.0007856945,0.00008332945,0.000007412886,0.00001635616,0.003490853,0.00002959589,0.001152866],"genre_scores_gemma":[0.9931248,0.0001472124,0.001547617,0.0001191753,0.000006124975,0.00001122342,0.004434745,0.00001602898,0.0005930953],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008603248,"threshold_uncertainty_score":0.01710635,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01629696093736275,"score_gpt":0.2363687671539989,"score_spread":0.2200718062166361,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}