{"id":"W2810934340","doi":"10.1186/s40168-018-0502-8","title":"Increased richness and diversity of the vaginal microbiota and spontaneous preterm birth","year":2018,"lang":"en","type":"article","venue":"Microbiome","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":212,"is_retracted":false,"has_abstract":true,"ca_institutions":"B.C. Women's Hospital & Health Centre; University of Toronto; Women's Health Research Institute; University of British Columbia; Lunenfeld-Tanenbaum Research Institute; University of Saskatchewan","funders":"Canadian Institutes of Health Research; Genome British Columbia; University of Saskatchewan","keywords":"Gardnerella vaginalis; Lactobacillus crispatus; Lactobacillus gasseri; Biology; Lactobacillus; Bacterial vaginosis; Pyrosequencing; Mollicutes; Microbiome; Vaginal flora; Physiology; Microbiology; Bioinformatics; Mycoplasma; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002759892,0.0001361684,0.0001899343,0.0001458121,0.000539769,0.00001654873,0.0002429366,0.0001324583,0.0002179436],"category_scores_gemma":[0.00006639109,0.00009968525,0.00004165624,0.0002583004,0.001862548,0.00006958498,0.0008282796,0.0002062273,0.00006328242],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003800043,"about_ca_system_score_gemma":0.00004138696,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005220135,"about_ca_topic_score_gemma":0.00005294853,"domain_scores_codex":[0.99902,0.0002015268,0.0001497404,0.000346694,0.00002606352,0.0002559976],"domain_scores_gemma":[0.999272,0.00008300334,0.0000803557,0.0003956631,0.0001481567,0.00002078648],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001602375,0.0000796064,0.05467938,0.00003663075,0.00009173379,0.000007759757,0.0004612848,3.283295e-8,0.9430619,0.0000322283,0.0004587877,0.0009304154],"study_design_scores_gemma":[0.0009619705,0.0002463683,0.3740751,0.00003246559,0.00004260605,0.004445654,0.0000777388,4.199975e-7,0.6029661,0.00005500136,0.01693934,0.0001572674],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980817,0.0006923248,0.000009579441,0.0001532511,0.0002872448,0.0002876311,0.0001144782,0.00002612356,0.0003476465],"genre_scores_gemma":[0.998014,0.0000316162,0.00005201616,0.00003967376,0.00002613222,0.000002666397,0.000009395553,0.000009609051,0.001814868],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3400958,"threshold_uncertainty_score":0.6862637,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01070258879160962,"score_gpt":0.2369795937683533,"score_spread":0.2262770049767436,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}