{"id":"W2811003162","doi":"10.1101/363804","title":"Widespread separation of the polypyrimidine tract from 3’ AG by G tracts in association with alternative exons in metazoa and plants","year":2018,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Winnipeg; University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Intron; Polypyrimidine tract; RNA splicing; Biology; Exon; Gene; Genetics; splice; Genome; Splicing factor; Polypyrimidine tract-binding protein; Human genome; Alternative splicing; Point mutation; Spliceosome; Group II intron; Group I catalytic intron; RNA; Mutation","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001350908,0.0002444129,0.0003301238,0.000999634,0.0004904203,0.0004335001,0.0001889514,0.0004476769,0.001586317],"category_scores_gemma":[0.0003315279,0.0002065601,0.0004479574,0.000861043,0.0003806453,0.0002666352,0.0005414661,0.0003985868,0.000782193],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001566204,"about_ca_system_score_gemma":0.0002018086,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007945384,"about_ca_topic_score_gemma":0.001264601,"domain_scores_codex":[0.9997482,0.00001794238,0.00001999122,0.0001194706,0.00005462469,0.00003984953],"domain_scores_gemma":[0.9994387,0.00006643641,0.0002723059,0.00005569008,0.00006107284,0.000105705],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003358283,0.00002161095,0.0772087,0.0003416552,0.0001370605,0.0008466083,0.0003847984,0.0001211949,0.9065069,0.000345783,0.0002565949,0.01349333],"study_design_scores_gemma":[0.00001390679,0.0001786984,0.9150318,0.00006121815,0.0001656519,0.005623656,0.0003914755,0.0005748026,0.06458072,0.0006880143,0.01265743,0.00003253741],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9898614,0.004644351,0.002776427,0.00007490957,0.0000209464,0.00001061287,0.001054092,0.0001121152,0.001444992],"genre_scores_gemma":[0.9949569,0.0007604508,0.001721519,0.0000812679,0.00001748579,0.00001073203,0.001612474,0.00002595829,0.0008133222],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001586317,"threshold_uncertainty_score":0.00530678,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01164006630655327,"score_gpt":0.2475641631817425,"score_spread":0.2359240968751892,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}