{"id":"W2811057569","doi":"10.1101/356790","title":"Megaphage infect <i>Prevotella</i> and variants are widespread in gut microbiomes","year":2018,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Grand Challenges Canada; Joint Genome Institute; Australian Government; Alfred P. Sloan Foundation; National Institutes of Health; National Science Foundation","keywords":"Biology; Genome; Microbiome; Phage therapy; Bacteriophage; Prevotella; Genetics; Evolutionary biology; CRISPR; Gene; Bacteria","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003937805,0.0003912788,0.0004196005,0.0009968783,0.0005636294,0.001331558,0.0001863831,0.0005541315,0.001693553],"category_scores_gemma":[0.0007070822,0.0003942102,0.0005210934,0.000883452,0.0003484785,0.0004877372,0.0007028667,0.0004496814,0.0006993812],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002770498,"about_ca_system_score_gemma":0.0003018156,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001535426,"about_ca_topic_score_gemma":0.001967495,"domain_scores_codex":[0.9996847,0.00002895226,0.00002431625,0.0001263681,0.0000718377,0.0000638314],"domain_scores_gemma":[0.9995456,0.00007703033,0.0002109894,0.00005208918,0.0000465642,0.00006756648],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005554744,0.00004265813,0.1818113,0.0008545226,0.0001551368,0.0004689986,0.0006699921,0.0005266495,0.7874399,0.0006265172,0.0008162937,0.02603256],"study_design_scores_gemma":[0.00001739372,0.0002451256,0.8875407,0.0003190115,0.0001586161,0.001862041,0.001082341,0.002133035,0.08533738,0.0008134559,0.02044629,0.00004460456],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9849028,0.004046653,0.004486862,0.0001554949,0.00003682503,0.00003319955,0.00395206,0.0002135775,0.00217258],"genre_scores_gemma":[0.9727753,0.002409254,0.01369941,0.0003207127,0.00004731378,0.0000654515,0.008593314,0.0001197803,0.001969366],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001693553,"threshold_uncertainty_score":0.005665481,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008210758119222472,"score_gpt":0.2073918157329754,"score_spread":0.199181057613753,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}