{"id":"W2811184702","doi":"10.1139/gen-2017-0208","title":"Horizontal transfers of LTR retrotransposons in seven species of Rosales","year":2018,"lang":"en","type":"article","venue":"Genome","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Retrotransposon; Transposable element; Biology; Long terminal repeat; Genome; Phylogenetic tree; Mobile genetic elements; Genetics; Horizontal gene transfer; Transposition (logic); Genome evolution; Evolutionary biology; Gene","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002930441,0.0003092233,0.0002880652,0.001750105,0.0006648366,0.0003199631,0.0003940216,0.0002756302,0.000594574],"category_scores_gemma":[0.0004427755,0.0001872469,0.0004257993,0.0007734645,0.0002797473,0.0002499583,0.0003269347,0.0002220909,0.0002234739],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003520744,"about_ca_system_score_gemma":0.00024686,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001734573,"about_ca_topic_score_gemma":0.002637198,"domain_scores_codex":[0.9997998,0.00001945155,0.00002747318,0.00007710756,0.00004074081,0.00003543706],"domain_scores_gemma":[0.9996362,0.00007913791,0.0001461044,0.00003348252,0.00005912015,0.00004593335],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007815729,0.0001584413,0.1461087,0.000477163,0.0001381329,0.0009731596,0.002637423,0.0004508902,0.8201168,0.0004049545,0.00005798142,0.02769483],"study_design_scores_gemma":[0.00005178869,0.0007364453,0.9483488,0.00008261261,0.00030066,0.001533326,0.002286869,0.001841608,0.03883896,0.0003261583,0.005598316,0.00005455504],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990037,0.0001830296,0.000357563,0.000006611103,0.00000193426,0.00001264541,0.0001938123,0.00001363952,0.0002270806],"genre_scores_gemma":[0.9964615,0.0002088562,0.001949886,0.00001467248,0.000003558158,0.00001996975,0.001013318,0.000009509219,0.0003188849],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001750105,"threshold_uncertainty_score":0.003448904,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01875664910152134,"score_gpt":0.2035044610542289,"score_spread":0.1847478119527076,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}