{"id":"W2829329520","doi":"10.1016/j.ttbdis.2018.07.002","title":"Three genetically distinct clades of Anaplasma phagocytophilum in Ixodes scapularis","year":2018,"lang":"en","type":"article","venue":"Ticks and Tick-borne Diseases","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":false,"ca_institutions":"Public Health Agency of Canada; University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Anaplasma phagocytophilum; Ixodes scapularis; Clade; Monophyly; Phylogenetic tree; Genetics; Anaplasma; Ixodes; Virology; Phylogenetics; Gene; Tick; Ixodidae; Borrelia burgdorferi","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001009637,0.0002983923,0.0004913734,0.0001937457,0.0001599014,0.00003229952,0.0002284491,0.0001845834,0.00127632],"category_scores_gemma":[0.0003661849,0.0002636448,0.0001276399,0.0002550815,0.001301956,0.0001045155,0.0001590607,0.0001530998,0.0001876503],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003436232,"about_ca_system_score_gemma":0.0001313352,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006032211,"about_ca_topic_score_gemma":0.001001583,"domain_scores_codex":[0.9983709,0.0001121325,0.0004575103,0.0004969899,0.00006679868,0.0004956296],"domain_scores_gemma":[0.9989405,0.0002382625,0.0001348212,0.0004248035,0.0001527081,0.0001089053],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008815539,0.001556382,0.9463574,0.000194183,0.0004383014,0.00004571588,0.0002593064,0.000005001378,0.0213461,0.008499353,0.001603575,0.0188131],"study_design_scores_gemma":[0.001779522,0.0006804861,0.983543,0.00009194805,0.0002985407,0.00003622331,0.00009755818,0.00008336233,0.008256441,0.003629532,0.001160261,0.0003430873],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9897509,0.008087225,0.0002085181,0.0001437708,0.0002501664,0.0002947321,0.0002213655,0.00009201442,0.0009513011],"genre_scores_gemma":[0.9993657,0.000115055,0.00007005473,0.00009445931,0.00010629,0.0000328444,0.0000869606,0.00003176587,0.00009687701],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03718561,"threshold_uncertainty_score":0.9999816,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01021744185872492,"score_gpt":0.2424057331408547,"score_spread":0.2321882912821298,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}