{"id":"W2829329520","doi":"10.1016/j.ttbdis.2018.07.002","title":"Three genetically distinct clades of Anaplasma phagocytophilum in Ixodes scapularis","year":2018,"lang":"en","type":"article","venue":"Ticks and Tick-borne Diseases","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":false,"ca_institutions":"Public Health Agency of Canada; University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Anaplasma phagocytophilum; Ixodes scapularis; Clade; Monophyly; Phylogenetic tree; Genetics; Anaplasma; Ixodes; Virology; Phylogenetics; Gene; Tick; Ixodidae; Borrelia burgdorferi","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002607949,0.0002806615,0.0002419884,0.001078361,0.0007598765,0.0006551129,0.0003025468,0.0003974339,0.0004859714],"category_scores_gemma":[0.0005094106,0.0001990895,0.0002476644,0.0003247345,0.0005340565,0.000292936,0.0005746668,0.0004211891,0.0001306452],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003211407,"about_ca_system_score_gemma":0.000251228,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001983673,"about_ca_topic_score_gemma":0.002857568,"domain_scores_codex":[0.9997018,0.00004607818,0.00002338417,0.0001273941,0.00004001704,0.00006124367],"domain_scores_gemma":[0.9995773,0.00008791876,0.000158797,0.00003179812,0.00007582382,0.00006833974],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001537276,0.0002554258,0.4565595,0.00006001349,0.0001044979,0.0001953277,0.002685927,0.0002042929,0.5305647,0.0004752659,0.0001276249,0.007230127],"study_design_scores_gemma":[0.00001698772,0.0002168894,0.9921584,0.00001459511,0.00005516623,0.0003373806,0.001502207,0.0003911955,0.004685297,0.000196128,0.0004159841,0.000009735412],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995453,0.00006141216,0.0001057653,0.00001116099,0.000002429116,0.000005691899,0.00005723003,0.00000160722,0.0002095097],"genre_scores_gemma":[0.9992518,0.00004523251,0.0002633898,0.00002070789,0.000004453636,0.00001053967,0.0002258834,0.000001648485,0.0001764712],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001983673,"threshold_uncertainty_score":0.003944337,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01021744185872492,"score_gpt":0.2424057331408547,"score_spread":0.2321882912821298,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}