{"id":"W2839489218","doi":"10.3389/fmicb.2018.01581","title":"Application of Transcriptomics to Compare the Carbohydrate Active Enzymes That Are Expressed by Diverse Genera of Anaerobic Fungi to Degrade Plant Cell Wall Carbohydrates","year":2018,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":71,"is_retracted":false,"has_abstract":true,"ca_institutions":"Concordia University; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Genome Alberta; Genome Canada","keywords":"Biology; Rumen; Transcriptome; Phylum; Cell wall; Hemicellulose; Metaproteomics; Metagenomics; Gene; Lignin; Botany; Microbiology; Biochemistry; Gene expression; Fermentation","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003627521,0.0004343791,0.0004388223,0.001556807,0.0004197435,0.0007441903,0.0001786683,0.0004720418,0.0009041349],"category_scores_gemma":[0.0004210997,0.0001645149,0.0005456653,0.001703841,0.0003127619,0.0003397992,0.0003901268,0.0006469708,0.0003859243],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002400915,"about_ca_system_score_gemma":0.0003187724,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005855578,"about_ca_topic_score_gemma":0.001103831,"domain_scores_codex":[0.999714,0.00003634361,0.00002009866,0.0001195643,0.0000657922,0.00004416784],"domain_scores_gemma":[0.9996843,0.000128339,0.00008386221,0.00001815127,0.0000541577,0.0000311712],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008708739,0.00003379539,0.004907901,0.0002051209,0.00003158566,0.00006310175,0.00008607205,0.0001430608,0.9869887,0.0001207159,0.0000730808,0.007259913],"study_design_scores_gemma":[0.00004484459,0.001084298,0.5140042,0.0002241289,0.0003767257,0.001609109,0.001283378,0.01089849,0.4494603,0.002384865,0.01855421,0.00007543944],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9120732,0.00872776,0.04976908,0.0004523284,0.0001524905,0.0002965251,0.02247618,0.000280397,0.005772051],"genre_scores_gemma":[0.8846598,0.009403298,0.08128603,0.0007011314,0.0001423428,0.0008136467,0.01947936,0.0001004818,0.003413976],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001556807,"threshold_uncertainty_score":0.003024638,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01388856724989602,"score_gpt":0.2021092860941018,"score_spread":0.1882207188442058,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}