{"id":"W2866889209","doi":"10.21769/bioprotoc.2915","title":"Mouse Mammary Gland Whole Mount Preparation and Analysis","year":2018,"lang":"en","type":"article","venue":"BIO-PROTOCOL","topic":"Cancer Cells and Metastasis","field":"Medicine","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University; Victoria Hospital; London Health Sciences Centre","funders":"","keywords":"Mammary gland; Adipose tissue; Epithelium; Fat pad; Myoepithelial cell; Stroma","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001485284,0.0001105189,0.0002238891,0.0001334239,0.00006867075,0.00004500157,0.0000474809,0.00006174638,0.0003098728],"category_scores_gemma":[0.00001502504,0.00008535796,0.00008113129,0.0003257352,0.00006892664,0.00008528148,0.0000430775,0.00005067324,0.00005083811],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006050457,"about_ca_system_score_gemma":0.00006042398,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001838374,"about_ca_topic_score_gemma":0.0001579926,"domain_scores_codex":[0.9992004,0.00002457609,0.0001906993,0.0002662837,0.0001685267,0.0001494964],"domain_scores_gemma":[0.999356,0.000008647497,0.00007251844,0.0003489162,0.00009248028,0.0001214104],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.01093547,0.001562961,0.1658662,0.001936244,0.003758789,0.0001055442,0.002458622,0.00001233765,0.5178684,0.001124013,0.1114696,0.1829018],"study_design_scores_gemma":[0.0028384,0.0007105515,0.02342939,0.00002007696,0.0003730093,0.000009654585,0.00002197735,0.0005952658,0.05784058,0.00003219673,0.9139882,0.0001406749],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"protocol","genre_gemma":"protocol","genre_scores_codex":[0.08784254,0.00002030912,0.00390658,0.0007616908,0.00006188084,0.8975478,0.00005561112,0.0001482663,0.009655318],"genre_scores_gemma":[0.0458314,0.000002445208,0.003326482,0.0004443302,0.0004270282,0.9441956,0.00004034724,0.00001750951,0.005714803],"genre_candidate":"protocol","genre_consensus":"protocol","teacher_disagreement_score":0.8025186,"threshold_uncertainty_score":0.3480797,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02114938523970749,"score_gpt":0.3432805833683511,"score_spread":0.3221311981286436,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}