{"id":"W2876758001","doi":"10.3390/microorganisms6030065","title":"Stable Isotope and Metagenomic Profiling of a Methanogenic Naphthalene-Degrading Enrichment Culture","year":2018,"lang":"en","type":"article","venue":"Microorganisms","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Metagenomics; Stable-isotope probing; Naphthalene; Methanogenesis; Metabolite; Enrichment culture; Biodegradation; Chemistry; Environmental chemistry; Anoxic waters; Microbial biodegradation; Microbial metabolism; Biochemistry; Biology; Bacteria; Gene; Methane; Organic chemistry; Microorganism; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002641361,0.0001431596,0.0001736928,0.00003108996,0.0001078333,0.00002476295,0.0001708211,0.00007735233,0.00268873],"category_scores_gemma":[0.00001674984,0.0001154032,0.00004031848,0.0002155067,0.0001964127,0.000102666,0.0001816421,0.00006782598,0.0003563785],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000108455,"about_ca_system_score_gemma":0.00001621034,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007642464,"about_ca_topic_score_gemma":0.00003480842,"domain_scores_codex":[0.9990399,0.00004234752,0.0002322581,0.0003038611,0.0001419237,0.0002396569],"domain_scores_gemma":[0.9996016,0.00001035873,0.0001180807,0.0001711437,0.00001615446,0.00008268625],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000009737299,0.00002387797,0.008192608,0.000008721904,0.00001854111,0.000001102359,0.0008630696,6.222402e-7,0.9896379,0.00002325646,0.0006625409,0.0005580396],"study_design_scores_gemma":[0.0002533291,0.00009926343,0.004023295,0.0000068024,0.0000245529,0.00001350932,0.0001603993,0.00001524574,0.9893137,0.00006246456,0.005881884,0.0001455979],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972891,0.0002364668,0.0001862222,0.00005152173,0.0001169975,0.0002416205,0.00002732807,0.00002535435,0.00182541],"genre_scores_gemma":[0.9855391,0.0000743725,0.01305888,0.0001857064,0.00004023761,0.000001863971,0.000007570022,0.00001473175,0.001077551],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01287266,"threshold_uncertainty_score":0.9982229,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009894405675342749,"score_gpt":0.2208587402708753,"score_spread":0.2109643345955325,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}