{"id":"W2876758001","doi":"10.3390/microorganisms6030065","title":"Stable Isotope and Metagenomic Profiling of a Methanogenic Naphthalene-Degrading Enrichment Culture","year":2018,"lang":"en","type":"article","venue":"Microorganisms","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Metagenomics; Stable-isotope probing; Naphthalene; Methanogenesis; Metabolite; Enrichment culture; Biodegradation; Chemistry; Environmental chemistry; Anoxic waters; Microbial biodegradation; Microbial metabolism; Biochemistry; Biology; Bacteria; Gene; Methane; Organic chemistry; Microorganism; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001934287,0.0004218416,0.000340948,0.0003948925,0.0002267671,0.0003945397,0.0001967321,0.000277304,0.0002749793],"category_scores_gemma":[0.0002253948,0.0001077912,0.0003038638,0.0004681341,0.0001347451,0.0002183649,0.0002534628,0.0003603802,0.0002309137],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000136425,"about_ca_system_score_gemma":0.0003283939,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001477379,"about_ca_topic_score_gemma":0.001734585,"domain_scores_codex":[0.9997841,0.00002519618,0.00001783459,0.00005334031,0.00008256012,0.00003692095],"domain_scores_gemma":[0.9998829,0.00002526996,0.00001636379,0.0000103659,0.00003644506,0.00002856135],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004754451,0.00002792469,0.0008980403,0.00001268379,0.000004739514,0.00002194478,0.00003066465,0.00005183702,0.9977908,0.00001150076,0.000009111168,0.001093144],"study_design_scores_gemma":[0.00001126364,0.0006621195,0.05411733,0.00001397496,0.00006711762,0.0002711235,0.0003154473,0.003553864,0.9394599,0.00009386867,0.001414341,0.000019741],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9935289,0.0003312498,0.003364802,0.00007839217,0.00001607962,0.00006096357,0.001815023,0.00003720885,0.0007672666],"genre_scores_gemma":[0.974016,0.0008116167,0.01665745,0.00009935505,0.00002316968,0.0001287775,0.005285234,0.00003044833,0.002947914],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001477379,"threshold_uncertainty_score":0.002937496,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009894405675342749,"score_gpt":0.2208587402708753,"score_spread":0.2109643345955325,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}