{"id":"W2883127020","doi":"10.4269/ajtmh.18-0145","title":"Trends, Associations, and Antimicrobial Resistance of Salmonella Typhi and Paratyphi in Pakistan","year":2018,"lang":"en","type":"article","venue":"American Journal of Tropical Medicine and Hygiene","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":62,"is_retracted":false,"has_abstract":true,"ca_institutions":"SickKids Foundation; Hospital for Sick Children","funders":"Hospital for Sick Children; Bill and Melinda Gates Foundation","keywords":"Salmonella typhi; Salmonella; Antimicrobial; Microbiology; Typhoid fever; Medicine; Antibiotic resistance; Virology; Biology; Antibiotics; Bacteria; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004354182,0.0001433885,0.0002726244,0.001130494,0.0001405535,0.0003257416,0.0002066446,0.0001692646,0.0007076652],"category_scores_gemma":[0.001274219,0.0001489714,0.0003779619,0.00213476,0.0001633463,0.0004394235,0.0001857902,0.0002707671,0.00006185223],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003873467,"about_ca_system_score_gemma":0.0008759237,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01982011,"about_ca_topic_score_gemma":0.02603976,"domain_scores_codex":[0.9997124,0.00003977475,0.0000718806,0.0000632813,0.00006595644,0.00004671212],"domain_scores_gemma":[0.9992071,0.0001995841,0.0003434638,0.000023207,0.0001810234,0.00004569292],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001878938,0.0000304367,0.8874045,0.004062663,0.0005946934,0.0004313252,0.0006715161,0.0002341589,0.0004489367,0.0002029583,0.001765093,0.1039658],"study_design_scores_gemma":[0.000005829823,0.0000976352,0.992618,0.0005265611,0.0002453456,0.0007470066,0.0007170292,0.0001047772,0.00009901851,0.00005375806,0.004775219,0.000009860468],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.770519,0.2220934,0.0004110086,0.0009206425,0.00008906454,0.00004613501,0.003822123,0.00001585398,0.002082802],"genre_scores_gemma":[0.8659511,0.1320318,0.000290965,0.0001179159,0.00006217914,0.00002209271,0.001346666,0.000002293433,0.0001749658],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01982011,"threshold_uncertainty_score":0.03940952,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02042765601432564,"score_gpt":0.2957837434609796,"score_spread":0.275356087446654,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}