{"id":"W2883706068","doi":"10.1038/protex.2015.048","title":"BAC ends library generation for Illumina sequencing","year":2015,"lang":"en","type":"article","venue":"Protocol Exchange","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"L'Alliance Boviteq","funders":"Agence Nationale de la Recherche","keywords":"Illumina dye sequencing; Computational biology; DNA sequencing; Biology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001430868,0.0001179018,0.00009622153,0.00002535255,0.00006878367,0.00002731899,0.0001094916,0.00008311685,0.00001666486],"category_scores_gemma":[0.00003464902,0.0001094741,0.00005330267,0.00004133743,0.00003025847,0.000001971315,0.00009000288,0.0000264125,0.000006234651],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001478809,"about_ca_system_score_gemma":0.0001008443,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000006914804,"about_ca_topic_score_gemma":0.00001303518,"domain_scores_codex":[0.9993333,0.00002630095,0.0001321557,0.0002544465,0.00006592128,0.000187829],"domain_scores_gemma":[0.9995914,0.000004140791,0.00005618697,0.0001996468,0.00006763612,0.00008100017],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001053791,0.00002900252,0.0007702461,0.00006806882,0.00003324975,7.793245e-7,0.0003437248,0.00002126247,0.9554631,0.0001145167,0.03716821,0.005882428],"study_design_scores_gemma":[0.0007742473,0.0004762389,0.00008258355,0.000004543416,0.000006300523,0.000003736297,0.00006201423,0.0001988779,0.3460622,0.0002222341,0.6519552,0.0001517914],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"protocol","genre_gemma":"protocol","genre_scores_codex":[0.3538814,0.001901913,0.0132833,0.001574978,0.001118759,0.5826059,0.0004140012,0.000085261,0.04513444],"genre_scores_gemma":[0.1614312,0.00002654622,0.0164253,0.0008304724,0.003285583,0.8132136,0.0002315845,0.00007297011,0.004482767],"genre_candidate":"protocol","genre_consensus":"protocol","teacher_disagreement_score":0.614787,"threshold_uncertainty_score":0.4464223,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08854422327749964,"score_gpt":0.3041260450242523,"score_spread":0.2155818217467526,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}