{"id":"W2883885053","doi":"10.1038/s41564-018-0210-y","title":"Murine colitis reveals a disease-associated bacteriophage community","year":2018,"lang":"en","type":"article","venue":"Nature Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":171,"is_retracted":false,"has_abstract":false,"ca_institutions":"","funders":"University of Colorado School of Medicine, Anschutz Medical Campus; National Institutes of Health; Government of Canada; Joint Genome Institute; Office of Science; North Carolina State University; National Institute of Diabetes and Digestive and Kidney Diseases; U.S. Department of Energy","keywords":"Dysbiosis; Biology; Metagenomics; Bacteriophage; Colitis; Human virome; Inflammatory bowel disease; Population; Disease; Microbiology; Immunology; Microbiome; Virology; Gut flora; Gene; Genetics; Medicine; Escherichia coli","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001702221,0.0003927995,0.000223734,0.0007666097,0.0002055846,0.0004100947,0.0001441148,0.0004252154,0.0009373379],"category_scores_gemma":[0.0002346626,0.0002349803,0.0002128486,0.0001838077,0.0003106449,0.000266593,0.0003568942,0.000669339,0.0002376974],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001785958,"about_ca_system_score_gemma":0.0002042744,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002825775,"about_ca_topic_score_gemma":0.0004149489,"domain_scores_codex":[0.9997675,0.0000351124,0.00001393224,0.00006071689,0.00005876073,0.00006394801],"domain_scores_gemma":[0.9995067,0.00004324754,0.0001429746,0.00004527154,0.00004336194,0.0002183531],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007924381,0.00006027875,0.002445933,0.00003147284,0.000008604155,0.0001384824,0.00005649363,0.00005612803,0.9947695,0.0001013889,0.00004641893,0.001492731],"study_design_scores_gemma":[0.000153494,0.002244041,0.195382,0.00007383765,0.000123989,0.001979662,0.0005841614,0.002783994,0.7919874,0.001099849,0.003544241,0.00004333094],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965885,0.0007111205,0.001553998,0.00006563544,0.00002078952,0.00001526951,0.0002232994,0.00007390245,0.0007475317],"genre_scores_gemma":[0.9969139,0.0002707702,0.001473871,0.0000429081,0.00001243106,0.00001305906,0.0001768436,0.00002461701,0.001071602],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009373379,"threshold_uncertainty_score":0.003135741,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006561166955672288,"score_gpt":0.2449954969722966,"score_spread":0.2384343300166243,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}