{"id":"W2883966645","doi":"10.1016/j.cell.2018.06.033","title":"The Chara Genome: Secondary Complexity and Implications for Plant Terrestrialization","year":2018,"lang":"en","type":"article","venue":"Cell","topic":"Plant Diversity and Evolution","field":"Agricultural and Biological Sciences","cited_by":549,"is_retracted":false,"has_abstract":false,"ca_institutions":"Dalhousie University","funders":"Japan Society for the Promotion of Science; Biotechnology and Biological Sciences Research Council; Vlaamse regering; Ministerstvo Školství, Mládeže a Tělovýchovy; Universiteit Gent; Fonds Wetenschappelijk Onderzoek; Carlsbergfondet; Deutsche Forschungsgemeinschaft; National Science Foundation of Sri Lanka; Leibniz-Gemeinschaft; Ministry of Education, Culture, Sports, Science and Technology; Agence Nationale de la Recherche; Villum Fonden; National Science Foundation; National Institute for Basic Biology; Hyogo Science and Technology Association","keywords":"Biology; Genome; Gene; Plant evolution; Transcriptome; Botany; Algae; Plastid; Endosymbiosis; Chloroplast; Cell biology; Genetics; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006750983,0.0000272376,0.00002831263,0.000001791905,0.0005988264,0.00003121813,0.00006674619,0.00002286102,0.0000214722],"category_scores_gemma":[0.000006183598,0.000009328902,0.00001252783,0.00003366725,0.00007447143,0.00003475134,0.00002165219,0.0000168083,0.00001185277],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005355364,"about_ca_system_score_gemma":0.000002714629,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003511947,"about_ca_topic_score_gemma":0.0002755163,"domain_scores_codex":[0.9997805,0.00001077472,0.00004101856,0.00007227884,0.00001914444,0.0000762279],"domain_scores_gemma":[0.9998524,0.00006417279,0.00002433744,0.00001737056,0.00001900956,0.00002266518],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001902596,0.00008002054,0.009560727,0.00001531921,0.00001453911,2.29727e-7,0.0003135345,5.131731e-7,0.8786946,0.009065208,0.06474034,0.03732475],"study_design_scores_gemma":[0.00008842562,0.00007637862,0.5719741,0.000001172205,0.000004678157,0.000001616912,0.00005360155,0.0001001429,0.0009350132,0.002981231,0.4237389,0.00004473604],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955834,0.00009159208,0.00005776787,0.001981562,0.0001232238,0.0001520982,0.0005203115,0.00001841929,0.001471675],"genre_scores_gemma":[0.9988025,0.0000771039,0.00002793952,0.0001137519,0.0002966417,0.000004109556,0.000469546,1.398513e-7,0.0002082655],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8777596,"threshold_uncertainty_score":0.460575,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05916399194993278,"score_gpt":0.2164601050152836,"score_spread":0.1572961130653509,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}