{"id":"W2884074669","doi":"10.1111/jeu.12669","title":"What Can Environmental Sequences Tell Us About the Distribution of Low‐Rank Taxa? The Case of <i>Euplotes</i> (Ciliophora, Spirotrichea), Including a Description of <i>Euplotes enigma</i> sp. nov.","year":2018,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Taxon; Systematics; Evolutionary biology; Monophyly; Ecology; Genus; Biogeography; Phylogenetics; Zoology; Clade; Taxonomy (biology); Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006892734,0.0001913618,0.000417113,0.00006092165,0.0001743791,0.00001656369,0.000477631,0.0002051617,0.00002245823],"category_scores_gemma":[0.0001111288,0.0001225631,0.000269404,0.0001614772,0.00122619,0.0000239235,0.0002258793,0.0002017064,0.000002085271],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005088133,"about_ca_system_score_gemma":0.0001286884,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001732736,"about_ca_topic_score_gemma":0.0001309582,"domain_scores_codex":[0.9984604,0.000313109,0.0006991114,0.0001978887,0.00008429404,0.0002452291],"domain_scores_gemma":[0.9983245,0.0000992787,0.00105586,0.0003009358,0.0001632308,0.00005618486],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002636917,0.0001444744,0.01912616,0.00008427471,0.0001935803,0.00003857623,0.0003194911,0.00003858435,0.9786631,0.00002919401,0.0002253033,0.000873608],"study_design_scores_gemma":[0.0009657472,0.001939713,0.01250679,0.0002596877,0.0003359336,0.004783058,0.001005061,0.00001715749,0.975867,0.0001643272,0.001928292,0.0002272608],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.978346,0.02014288,0.0004382046,0.0001018697,0.0003717415,0.0002453861,0.0003430549,0.000001655766,0.000009196028],"genre_scores_gemma":[0.9881403,0.01132416,0.000133732,0.0001395001,0.0001743733,0.000001774285,0.00006384917,0.000009974179,0.00001232975],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009794292,"threshold_uncertainty_score":0.4997977,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01610248523005754,"score_gpt":0.2281935029572907,"score_spread":0.2120910177272331,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}